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|
%global _empty_manifest_terminate_build 0
Name: python-airpg
Version: 1.1.4
Release: 1
Summary: A package to automatically access the inverted repeats of archived plastid genomes
License: GPLv3
URL: https://github.com/michaelgruenstaeudl/airpg
Source0: https://mirrors.aliyun.com/pypi/web/packages/30/24/14b2fcc1d3e9ad96632cd7348c4428faa5f7d422ae09bc1ac5dbbdeb5218/airpg-1.1.4.tar.gz
BuildArch: noarch
Requires: python3-biopython
Requires: python3-ete3
Requires: python3-entrezpy
Requires: python3-pandas
Requires: python3-fuzzywuzzy
Requires: python3-coloredlogs
Requires: python3-Levenshtein
%description
[](https://travis-ci.com/michaelgruenstaeudl/airpg)
[](https://pypi.python.org/pypi/airpg/)
[](https://pypi.python.org/pypi/airpg/)
[](https://pypi.python.org/pypi/airpg/)
[](https://pypi.python.org/pypi/airpg/)
A Python package for automatically accessing the inverted repeats of thousands of plastid genomes stored on NCBI Nucleotide
## INSTALLATION
To get the most recent stable version of *airpg*, run:
pip install airpg
Or, alternatively, if you want to get the latest development version of *airpg*, run:
pip install git+https://github.com/michaelgruenstaeudl/airpg.git
## EXAMPLE USAGE
### [Tutorial 1](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial1.md): Very short survey (runtime ca. 5 min.; for the impatient)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the past 10 days.
### [Tutorial 2](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial2.md): Short survey (runtime ca. 15 min.; for testing)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the current month.
### [Tutorial 3](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial3.md): Medium survey (runtime ca. 5 hours)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide in 2019 only. Note: The results of this survey are available on Zenodo via DOI [10.5281/zenodo.4335906](https://zenodo.org/record/4335906)
### [Tutorial 4](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial4.md): Full survey (runtime ca. 19 hours; with explanations)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide from January 2000 until, and including, December 2020. Note: The results of this survey are available on Zenodo via DOI [10.5281/zenodo.4335906](https://zenodo.org/record/4335906)
<!--
## PACKAGING INSTRUCTIONS
```
#pip install . ## For local testing
python3 -m build
python3 -m twine upload --repository testpypi dist/*
python3 -m pip install --index-url https://test.pypi.org/simple/ --no-deps airpg
python3 -m twine upload dist/*
python3 -m pip install airpg
```
-->
## CHANGELOG
See [`CHANGELOG.md`](CHANGELOG.md) for a list of recent changes to the software.
%package -n python3-airpg
Summary: A package to automatically access the inverted repeats of archived plastid genomes
Provides: python-airpg
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-airpg
[](https://travis-ci.com/michaelgruenstaeudl/airpg)
[](https://pypi.python.org/pypi/airpg/)
[](https://pypi.python.org/pypi/airpg/)
[](https://pypi.python.org/pypi/airpg/)
[](https://pypi.python.org/pypi/airpg/)
A Python package for automatically accessing the inverted repeats of thousands of plastid genomes stored on NCBI Nucleotide
## INSTALLATION
To get the most recent stable version of *airpg*, run:
pip install airpg
Or, alternatively, if you want to get the latest development version of *airpg*, run:
pip install git+https://github.com/michaelgruenstaeudl/airpg.git
## EXAMPLE USAGE
### [Tutorial 1](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial1.md): Very short survey (runtime ca. 5 min.; for the impatient)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the past 10 days.
### [Tutorial 2](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial2.md): Short survey (runtime ca. 15 min.; for testing)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the current month.
### [Tutorial 3](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial3.md): Medium survey (runtime ca. 5 hours)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide in 2019 only. Note: The results of this survey are available on Zenodo via DOI [10.5281/zenodo.4335906](https://zenodo.org/record/4335906)
### [Tutorial 4](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial4.md): Full survey (runtime ca. 19 hours; with explanations)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide from January 2000 until, and including, December 2020. Note: The results of this survey are available on Zenodo via DOI [10.5281/zenodo.4335906](https://zenodo.org/record/4335906)
<!--
## PACKAGING INSTRUCTIONS
```
#pip install . ## For local testing
python3 -m build
python3 -m twine upload --repository testpypi dist/*
python3 -m pip install --index-url https://test.pypi.org/simple/ --no-deps airpg
python3 -m twine upload dist/*
python3 -m pip install airpg
```
-->
## CHANGELOG
See [`CHANGELOG.md`](CHANGELOG.md) for a list of recent changes to the software.
%package help
Summary: Development documents and examples for airpg
Provides: python3-airpg-doc
%description help
[](https://travis-ci.com/michaelgruenstaeudl/airpg)
[](https://pypi.python.org/pypi/airpg/)
[](https://pypi.python.org/pypi/airpg/)
[](https://pypi.python.org/pypi/airpg/)
[](https://pypi.python.org/pypi/airpg/)
A Python package for automatically accessing the inverted repeats of thousands of plastid genomes stored on NCBI Nucleotide
## INSTALLATION
To get the most recent stable version of *airpg*, run:
pip install airpg
Or, alternatively, if you want to get the latest development version of *airpg*, run:
pip install git+https://github.com/michaelgruenstaeudl/airpg.git
## EXAMPLE USAGE
### [Tutorial 1](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial1.md): Very short survey (runtime ca. 5 min.; for the impatient)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the past 10 days.
### [Tutorial 2](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial2.md): Short survey (runtime ca. 15 min.; for testing)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the current month.
### [Tutorial 3](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial3.md): Medium survey (runtime ca. 5 hours)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide in 2019 only. Note: The results of this survey are available on Zenodo via DOI [10.5281/zenodo.4335906](https://zenodo.org/record/4335906)
### [Tutorial 4](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial4.md): Full survey (runtime ca. 19 hours; with explanations)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide from January 2000 until, and including, December 2020. Note: The results of this survey are available on Zenodo via DOI [10.5281/zenodo.4335906](https://zenodo.org/record/4335906)
<!--
## PACKAGING INSTRUCTIONS
```
#pip install . ## For local testing
python3 -m build
python3 -m twine upload --repository testpypi dist/*
python3 -m pip install --index-url https://test.pypi.org/simple/ --no-deps airpg
python3 -m twine upload dist/*
python3 -m pip install airpg
```
-->
## CHANGELOG
See [`CHANGELOG.md`](CHANGELOG.md) for a list of recent changes to the software.
%prep
%autosetup -n airpg-1.1.4
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-airpg -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Fri Jun 09 2023 Python_Bot <Python_Bot@openeuler.org> - 1.1.4-1
- Package Spec generated
|
