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author | CoprDistGit <infra@openeuler.org> | 2023-05-05 13:45:56 +0000 |
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committer | CoprDistGit <infra@openeuler.org> | 2023-05-05 13:45:56 +0000 |
commit | d2cfe397bb0d83f2fd7c4da866d5895e0eb06419 (patch) | |
tree | 755d6f6cd49d761f47eedc799246b61659fb379e | |
parent | 1f440977335cd35370c88c98775a305098e69ddd (diff) |
automatic import of python-akiflaggeropeneuler20.03
-rw-r--r-- | .gitignore | 1 | ||||
-rw-r--r-- | python-akiflagger.spec | 227 | ||||
-rw-r--r-- | sources | 1 |
3 files changed, 229 insertions, 0 deletions
@@ -0,0 +1 @@ +/akiFlagger-1.0.10.tar.gz diff --git a/python-akiflagger.spec b/python-akiflagger.spec new file mode 100644 index 0000000..7caa50b --- /dev/null +++ b/python-akiflagger.spec @@ -0,0 +1,227 @@ +%global _empty_manifest_terminate_build 0 +Name: python-akiFlagger +Version: 1.0.10 +Release: 1 +Summary: Flag patients with acute kidney injury as per the KDIGO guidelines. +License: MIT License +URL: https://github.com/isaranwrap/StandardizingAKI +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/f1/14/151dd6fe2bc6823157d3151fdbbc09b6745f424c5214bb34f7dced58a317/akiFlagger-1.0.10.tar.gz +BuildArch: noarch + +Requires: python3-numpy +Requires: python3-pandas + +%description +# AKIFlagger + +## Introduction + +Acute Kidney Injury (AKI) is a sudden onset of kidney failure and damage marked by an increase in the serum creatinine levels (amongst other biomarkers) of the patient. Kidney Disease Improving Global Outcomes (KDIGO) has a set of guidelines and standard definitions of AKI: + +* *Stage 1*: 50% increase in creatinine in < 7 days or 0.3 increase in creatinine in < 48 hours + +* *Stage 2*: 100% increase in (or doubling of) creatinine in < 48 hours + +* *Stage 3*: 200% increase in (or tripling of) creatinine in < 48 hours + +This package contains a flagger to determine if a patient has developed AKI based on longitudinal data of serum creatinine measurements. More information about the specific data input format can be found in the documentation under the *Getting Started* section. + +## Installation + +You can install the flagger with ``pip``. Simply type the following into command line and the +package should install properly. + +```python +pip install akiFlagger +``` + +To ensure that it is working properly, you can open a Python session and test it with. + +```python +import akiFlagger + +print(akiFlagger.__version__) + +>> '1.0.0' +``` + +Alternatively, you can download the source and wheel files to build manually from https://pypi.org/project/akiFlagger/. + + +## Getting started + +There is a [walk-through notebook](https://colab.research.google.com/github/isaranwrap/StandardizingAKI/blob/master/GettingStarted.ipynb) available on Github to introduce the necessary components and parameters of the flagger. The notebook can be accessed via Google Colab notebooks. The notebook has also been adapted in the [documentation](https://akiflagger.readthedocs.io/en/latest/). + +## Change Log + +**Version 0.1.x** - Function-based implementation of flagger. + +**Version 0.2.x** - Switched to class-based implementation (OOP approach). + +**Version 0.3.x** - Switched to single-column output for AKI column. + +**Version 0.4.x** - Removed encounter and admission as optional columns. + + + + +%package -n python3-akiFlagger +Summary: Flag patients with acute kidney injury as per the KDIGO guidelines. +Provides: python-akiFlagger +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-akiFlagger +# AKIFlagger + +## Introduction + +Acute Kidney Injury (AKI) is a sudden onset of kidney failure and damage marked by an increase in the serum creatinine levels (amongst other biomarkers) of the patient. Kidney Disease Improving Global Outcomes (KDIGO) has a set of guidelines and standard definitions of AKI: + +* *Stage 1*: 50% increase in creatinine in < 7 days or 0.3 increase in creatinine in < 48 hours + +* *Stage 2*: 100% increase in (or doubling of) creatinine in < 48 hours + +* *Stage 3*: 200% increase in (or tripling of) creatinine in < 48 hours + +This package contains a flagger to determine if a patient has developed AKI based on longitudinal data of serum creatinine measurements. More information about the specific data input format can be found in the documentation under the *Getting Started* section. + +## Installation + +You can install the flagger with ``pip``. Simply type the following into command line and the +package should install properly. + +```python +pip install akiFlagger +``` + +To ensure that it is working properly, you can open a Python session and test it with. + +```python +import akiFlagger + +print(akiFlagger.__version__) + +>> '1.0.0' +``` + +Alternatively, you can download the source and wheel files to build manually from https://pypi.org/project/akiFlagger/. + + +## Getting started + +There is a [walk-through notebook](https://colab.research.google.com/github/isaranwrap/StandardizingAKI/blob/master/GettingStarted.ipynb) available on Github to introduce the necessary components and parameters of the flagger. The notebook can be accessed via Google Colab notebooks. The notebook has also been adapted in the [documentation](https://akiflagger.readthedocs.io/en/latest/). + +## Change Log + +**Version 0.1.x** - Function-based implementation of flagger. + +**Version 0.2.x** - Switched to class-based implementation (OOP approach). + +**Version 0.3.x** - Switched to single-column output for AKI column. + +**Version 0.4.x** - Removed encounter and admission as optional columns. + + + + +%package help +Summary: Development documents and examples for akiFlagger +Provides: python3-akiFlagger-doc +%description help +# AKIFlagger + +## Introduction + +Acute Kidney Injury (AKI) is a sudden onset of kidney failure and damage marked by an increase in the serum creatinine levels (amongst other biomarkers) of the patient. Kidney Disease Improving Global Outcomes (KDIGO) has a set of guidelines and standard definitions of AKI: + +* *Stage 1*: 50% increase in creatinine in < 7 days or 0.3 increase in creatinine in < 48 hours + +* *Stage 2*: 100% increase in (or doubling of) creatinine in < 48 hours + +* *Stage 3*: 200% increase in (or tripling of) creatinine in < 48 hours + +This package contains a flagger to determine if a patient has developed AKI based on longitudinal data of serum creatinine measurements. More information about the specific data input format can be found in the documentation under the *Getting Started* section. + +## Installation + +You can install the flagger with ``pip``. Simply type the following into command line and the +package should install properly. + +```python +pip install akiFlagger +``` + +To ensure that it is working properly, you can open a Python session and test it with. + +```python +import akiFlagger + +print(akiFlagger.__version__) + +>> '1.0.0' +``` + +Alternatively, you can download the source and wheel files to build manually from https://pypi.org/project/akiFlagger/. + + +## Getting started + +There is a [walk-through notebook](https://colab.research.google.com/github/isaranwrap/StandardizingAKI/blob/master/GettingStarted.ipynb) available on Github to introduce the necessary components and parameters of the flagger. The notebook can be accessed via Google Colab notebooks. The notebook has also been adapted in the [documentation](https://akiflagger.readthedocs.io/en/latest/). + +## Change Log + +**Version 0.1.x** - Function-based implementation of flagger. + +**Version 0.2.x** - Switched to class-based implementation (OOP approach). + +**Version 0.3.x** - Switched to single-column output for AKI column. + +**Version 0.4.x** - Removed encounter and admission as optional columns. + + + + +%prep +%autosetup -n akiFlagger-1.0.10 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-akiFlagger -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 1.0.10-1 +- Package Spec generated @@ -0,0 +1 @@ +e33e5d184e51c4af2fab4cd8d681bcdb akiFlagger-1.0.10.tar.gz |