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author | CoprDistGit <infra@openeuler.org> | 2023-05-31 04:51:36 +0000 |
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committer | CoprDistGit <infra@openeuler.org> | 2023-05-31 04:51:36 +0000 |
commit | eacf5c48abdf688be2eb122320785adab7a3e2ed (patch) | |
tree | 50f6aa336588dd54c0ea37a5aab2bb781a70f9ac /python-azulejo.spec | |
parent | c14f8ecfe7935a4cef3fec85cd77b331037237e4 (diff) |
automatic import of python-azulejo
Diffstat (limited to 'python-azulejo.spec')
-rw-r--r-- | python-azulejo.spec | 118 |
1 files changed, 118 insertions, 0 deletions
diff --git a/python-azulejo.spec b/python-azulejo.spec new file mode 100644 index 0000000..6516c63 --- /dev/null +++ b/python-azulejo.spec @@ -0,0 +1,118 @@ +%global _empty_manifest_terminate_build 0 +Name: python-azulejo +Version: 0.10.1 +Release: 1 +Summary: tile phylogenetic space with subtrees +License: BSD-3-Clause +URL: https://github.com/joelb123/azulejo +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/86/8e/ec41ab485ca96895bfa4f9ce2ceb2857dd0f7a21e70cb21d4937082dbe1e/azulejo-0.10.1.tar.gz +BuildArch: noarch + +Requires: python3-click +Requires: python3-dask[bag] +Requires: python3-matplotlib +Requires: python3-numpy +Requires: python3-pandas +Requires: python3-click_plugins +Requires: python3-networkx +Requires: python3-uri +Requires: python3-toml +Requires: python3-pathvalidate +Requires: python3-attrs +Requires: python3-smart-open +Requires: python3-paramiko +Requires: python3-phylopandas +Requires: python3-click_loguru +Requires: python3-xxhash +Requires: python3-seaborn +Requires: python3-memory-tempfile +Requires: python3-progressbar2 +Requires: python3-requests_download +Requires: python3-packaging +Requires: python3-pyarrow +Requires: python3-biopython +Requires: python3-sh +Requires: python3-gffpandas-jb +Requires: python3-beautifulsoup4 +Requires: python3-fastaq +Requires: python3-amas + +%description +``azulejo`` azulejo combines homology and synteny information to +tile phylogenetic space. +The inputs to ``azulejo`` are FASTA files of nucleotide-space +sequences of primary-transcript protein genes and their associated GFF files. +Outputs are sets of proxy gene fragments chosen for +their concordance in multiple sequence alignments, along with +subtrees. + +%package -n python3-azulejo +Summary: tile phylogenetic space with subtrees +Provides: python-azulejo +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-azulejo +``azulejo`` azulejo combines homology and synteny information to +tile phylogenetic space. +The inputs to ``azulejo`` are FASTA files of nucleotide-space +sequences of primary-transcript protein genes and their associated GFF files. +Outputs are sets of proxy gene fragments chosen for +their concordance in multiple sequence alignments, along with +subtrees. + +%package help +Summary: Development documents and examples for azulejo +Provides: python3-azulejo-doc +%description help +``azulejo`` azulejo combines homology and synteny information to +tile phylogenetic space. +The inputs to ``azulejo`` are FASTA files of nucleotide-space +sequences of primary-transcript protein genes and their associated GFF files. +Outputs are sets of proxy gene fragments chosen for +their concordance in multiple sequence alignments, along with +subtrees. + +%prep +%autosetup -n azulejo-0.10.1 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-azulejo -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Wed May 31 2023 Python_Bot <Python_Bot@openeuler.org> - 0.10.1-1 +- Package Spec generated |