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%global _empty_manifest_terminate_build 0
Name: python-BESST
Version: 2.2.8
Release: 1
Summary: Scaffolder for genomic assemblies.
License: GPLv3
URL: https://github.com/ksahlin/BESST
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/4e/77/8e3ef4977dafc1c270b87f465b2850a346e9529077934ae3f8c520f3608d/BESST-2.2.8.tar.gz
BuildArch: noarch
%description
Supported on Linux / OSX with python2 (versions >= 2.7) and python3 (versions >=3.4) [](https://travis-ci.org/ksahlin/BESST)
BESST is a package for scaffolding genomic assemblies. BESST v1.0.4 is first described in [2] with various improvements in v2.0 (e.g. [3]). BESST is based on GapEst [1].
For installation, see docs/INSTALL.md. Manual is found in docs/MANUAL.md.
Please cite [2] and later manuscripts when using BESST! BiBTeX entries are available in the file besst.bib.
1. Sahlin K, Street N, Lundeberg J, Arvestad L (2012) "Improved gap size estimation for scaffolding algorithms." Bioinformatics 28(17), 2215-2222 [Link](http://bioinformatics.oxfordjournals.org/content/28/17/2215.long)
2. Sahlin K, Vezzi F, Nystedt B, Lundeberg J, Arvestad L (2014) "BESST--efficient scaffolding of large fragmented assemblies." BMC Bioinformatics 15, 281 [Link](http://www.biomedcentral.com/1471-2105/15/281)
3. Sahlin K, Chikhi R, Arvestad L (2016) "Assembly scaffolding with PE-contaminated mate-pair libraries." Bioinformatics [Link](https://bioinformatics.oxfordjournals.org/content/early/2016/03/09/bioinformatics.btw064)
%package -n python3-BESST
Summary: Scaffolder for genomic assemblies.
Provides: python-BESST
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-BESST
Supported on Linux / OSX with python2 (versions >= 2.7) and python3 (versions >=3.4) [](https://travis-ci.org/ksahlin/BESST)
BESST is a package for scaffolding genomic assemblies. BESST v1.0.4 is first described in [2] with various improvements in v2.0 (e.g. [3]). BESST is based on GapEst [1].
For installation, see docs/INSTALL.md. Manual is found in docs/MANUAL.md.
Please cite [2] and later manuscripts when using BESST! BiBTeX entries are available in the file besst.bib.
1. Sahlin K, Street N, Lundeberg J, Arvestad L (2012) "Improved gap size estimation for scaffolding algorithms." Bioinformatics 28(17), 2215-2222 [Link](http://bioinformatics.oxfordjournals.org/content/28/17/2215.long)
2. Sahlin K, Vezzi F, Nystedt B, Lundeberg J, Arvestad L (2014) "BESST--efficient scaffolding of large fragmented assemblies." BMC Bioinformatics 15, 281 [Link](http://www.biomedcentral.com/1471-2105/15/281)
3. Sahlin K, Chikhi R, Arvestad L (2016) "Assembly scaffolding with PE-contaminated mate-pair libraries." Bioinformatics [Link](https://bioinformatics.oxfordjournals.org/content/early/2016/03/09/bioinformatics.btw064)
%package help
Summary: Development documents and examples for BESST
Provides: python3-BESST-doc
%description help
Supported on Linux / OSX with python2 (versions >= 2.7) and python3 (versions >=3.4) [](https://travis-ci.org/ksahlin/BESST)
BESST is a package for scaffolding genomic assemblies. BESST v1.0.4 is first described in [2] with various improvements in v2.0 (e.g. [3]). BESST is based on GapEst [1].
For installation, see docs/INSTALL.md. Manual is found in docs/MANUAL.md.
Please cite [2] and later manuscripts when using BESST! BiBTeX entries are available in the file besst.bib.
1. Sahlin K, Street N, Lundeberg J, Arvestad L (2012) "Improved gap size estimation for scaffolding algorithms." Bioinformatics 28(17), 2215-2222 [Link](http://bioinformatics.oxfordjournals.org/content/28/17/2215.long)
2. Sahlin K, Vezzi F, Nystedt B, Lundeberg J, Arvestad L (2014) "BESST--efficient scaffolding of large fragmented assemblies." BMC Bioinformatics 15, 281 [Link](http://www.biomedcentral.com/1471-2105/15/281)
3. Sahlin K, Chikhi R, Arvestad L (2016) "Assembly scaffolding with PE-contaminated mate-pair libraries." Bioinformatics [Link](https://bioinformatics.oxfordjournals.org/content/early/2016/03/09/bioinformatics.btw064)
%prep
%autosetup -n BESST-2.2.8
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-BESST -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Mon May 15 2023 Python_Bot <Python_Bot@openeuler.org> - 2.2.8-1
- Package Spec generated
|
