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author | CoprDistGit <infra@openeuler.org> | 2023-06-20 05:03:07 +0000 |
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committer | CoprDistGit <infra@openeuler.org> | 2023-06-20 05:03:07 +0000 |
commit | 34040a586cc0cd23420365bda8abbc8ea8ed4079 (patch) | |
tree | ca805bc40e2402a85769516c133c489f678fe5ce | |
parent | 175c8b8ed02c717cf3adc3e0df7e8cdaab0808eb (diff) |
automatic import of python-bio2bel-keggopeneuler20.03
-rw-r--r-- | .gitignore | 1 | ||||
-rw-r--r-- | python-bio2bel-kegg.spec | 105 | ||||
-rw-r--r-- | sources | 1 |
3 files changed, 107 insertions, 0 deletions
@@ -0,0 +1 @@ +/bio2bel_kegg-0.3.0.tar.gz diff --git a/python-bio2bel-kegg.spec b/python-bio2bel-kegg.spec new file mode 100644 index 0000000..9d0169e --- /dev/null +++ b/python-bio2bel-kegg.spec @@ -0,0 +1,105 @@ +%global _empty_manifest_terminate_build 0 +Name: python-bio2bel-kegg +Version: 0.3.0 +Release: 1 +Summary: A package for converting KEGG gene sets into BEL +License: MIT +URL: https://github.com/bio2bel/kegg +Source0: https://mirrors.aliyun.com/pypi/web/packages/8a/36/7915e90c2c4331010f46aa246026b08aeb8a2e34ff00e0b7c2c26ce275a7/bio2bel_kegg-0.3.0.tar.gz +BuildArch: noarch + +Requires: python3-pybel +Requires: python3-click +Requires: python3-bio2bel[web] +Requires: python3-pyobo +Requires: python3-tqdm +Requires: python3-sqlalchemy +Requires: python3-requests +Requires: python3-pandas +Requires: python3-sphinx +Requires: python3-sphinx-rtd-theme +Requires: python3-sphinx-click +Requires: python3-sphinx-autodoc-typehints + +%description +This package allows the enrichment of BEL networks with KEGG information by wrapping its RESTful API. +Furthermore, it is integrated in the `ComPath environment <https://github.com/ComPath>`_ for pathway database comparison. +If you find this package useful, please consider citing [domingofernandez2018]_: + and curating mappings across pathway databases <https://doi.org/10.1038/s41540-018-0078-8>`_. + *Npj Systems Biology and Applications*, __5__(1), 3. +**Warning** This package creates ``partOf`` relationships in BEL, but does not convert KEGG mechanistic +relationships to BEL. That functionality is implemented in the +`PathMe project <https://github.com/pathwaymerger/pathme>`_. + +%package -n python3-bio2bel-kegg +Summary: A package for converting KEGG gene sets into BEL +Provides: python-bio2bel-kegg +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-bio2bel-kegg +This package allows the enrichment of BEL networks with KEGG information by wrapping its RESTful API. +Furthermore, it is integrated in the `ComPath environment <https://github.com/ComPath>`_ for pathway database comparison. +If you find this package useful, please consider citing [domingofernandez2018]_: + and curating mappings across pathway databases <https://doi.org/10.1038/s41540-018-0078-8>`_. + *Npj Systems Biology and Applications*, __5__(1), 3. +**Warning** This package creates ``partOf`` relationships in BEL, but does not convert KEGG mechanistic +relationships to BEL. That functionality is implemented in the +`PathMe project <https://github.com/pathwaymerger/pathme>`_. + +%package help +Summary: Development documents and examples for bio2bel-kegg +Provides: python3-bio2bel-kegg-doc +%description help +This package allows the enrichment of BEL networks with KEGG information by wrapping its RESTful API. +Furthermore, it is integrated in the `ComPath environment <https://github.com/ComPath>`_ for pathway database comparison. +If you find this package useful, please consider citing [domingofernandez2018]_: + and curating mappings across pathway databases <https://doi.org/10.1038/s41540-018-0078-8>`_. + *Npj Systems Biology and Applications*, __5__(1), 3. +**Warning** This package creates ``partOf`` relationships in BEL, but does not convert KEGG mechanistic +relationships to BEL. That functionality is implemented in the +`PathMe project <https://github.com/pathwaymerger/pathme>`_. + +%prep +%autosetup -n bio2bel_kegg-0.3.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-bio2bel-kegg -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Tue Jun 20 2023 Python_Bot <Python_Bot@openeuler.org> - 0.3.0-1 +- Package Spec generated @@ -0,0 +1 @@ +22227f7cfba17241898022a55a8f1157 bio2bel_kegg-0.3.0.tar.gz |