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%global _empty_manifest_terminate_build 0
Name: python-bio2bel-kegg
Version: 0.3.0
Release: 1
Summary: A package for converting KEGG gene sets into BEL
License: MIT
URL: https://github.com/bio2bel/kegg
Source0: https://mirrors.aliyun.com/pypi/web/packages/8a/36/7915e90c2c4331010f46aa246026b08aeb8a2e34ff00e0b7c2c26ce275a7/bio2bel_kegg-0.3.0.tar.gz
BuildArch: noarch
Requires: python3-pybel
Requires: python3-click
Requires: python3-bio2bel[web]
Requires: python3-pyobo
Requires: python3-tqdm
Requires: python3-sqlalchemy
Requires: python3-requests
Requires: python3-pandas
Requires: python3-sphinx
Requires: python3-sphinx-rtd-theme
Requires: python3-sphinx-click
Requires: python3-sphinx-autodoc-typehints
%description
This package allows the enrichment of BEL networks with KEGG information by wrapping its RESTful API.
Furthermore, it is integrated in the `ComPath environment <https://github.com/ComPath>`_ for pathway database comparison.
If you find this package useful, please consider citing [domingofernandez2018]_:
and curating mappings across pathway databases <https://doi.org/10.1038/s41540-018-0078-8>`_.
*Npj Systems Biology and Applications*, __5__(1), 3.
**Warning** This package creates ``partOf`` relationships in BEL, but does not convert KEGG mechanistic
relationships to BEL. That functionality is implemented in the
`PathMe project <https://github.com/pathwaymerger/pathme>`_.
%package -n python3-bio2bel-kegg
Summary: A package for converting KEGG gene sets into BEL
Provides: python-bio2bel-kegg
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-bio2bel-kegg
This package allows the enrichment of BEL networks with KEGG information by wrapping its RESTful API.
Furthermore, it is integrated in the `ComPath environment <https://github.com/ComPath>`_ for pathway database comparison.
If you find this package useful, please consider citing [domingofernandez2018]_:
and curating mappings across pathway databases <https://doi.org/10.1038/s41540-018-0078-8>`_.
*Npj Systems Biology and Applications*, __5__(1), 3.
**Warning** This package creates ``partOf`` relationships in BEL, but does not convert KEGG mechanistic
relationships to BEL. That functionality is implemented in the
`PathMe project <https://github.com/pathwaymerger/pathme>`_.
%package help
Summary: Development documents and examples for bio2bel-kegg
Provides: python3-bio2bel-kegg-doc
%description help
This package allows the enrichment of BEL networks with KEGG information by wrapping its RESTful API.
Furthermore, it is integrated in the `ComPath environment <https://github.com/ComPath>`_ for pathway database comparison.
If you find this package useful, please consider citing [domingofernandez2018]_:
and curating mappings across pathway databases <https://doi.org/10.1038/s41540-018-0078-8>`_.
*Npj Systems Biology and Applications*, __5__(1), 3.
**Warning** This package creates ``partOf`` relationships in BEL, but does not convert KEGG mechanistic
relationships to BEL. That functionality is implemented in the
`PathMe project <https://github.com/pathwaymerger/pathme>`_.
%prep
%autosetup -n bio2bel_kegg-0.3.0
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-bio2bel-kegg -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Tue Jun 20 2023 Python_Bot <Python_Bot@openeuler.org> - 0.3.0-1
- Package Spec generated
|
