automatic import of python-biobb-analysisopeneuler20.03

3 files changed, 390 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
index e69de29..0a3dbe0 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/biobb_analysis-4.0.1.tar.gz
diff --git a/python-biobb-analysis.spec b/python-biobb-analysis.spec
new file mode 100644
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--- /dev/null
+++ b/python-biobb-analysis.spec
@@ -0,0 +1,388 @@
+%global _empty_manifest_terminate_build 0
+Name:		python-biobb-analysis
+Version:	4.0.1
+Release:	1
+Summary:	Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations.
+License:	Apache Software License
+URL:		https://github.com/bioexcel/biobb_analysis
+Source0:	https://mirrors.aliyun.com/pypi/web/packages/70/ae/96a066c776608f54ec7b4c74796415be392e195d9dc6718278439c7c5375/biobb_analysis-4.0.1.tar.gz
+BuildArch:	noarch
+
+Requires:	python3-biobb-common
+
+%description
+[![](https://img.shields.io/github/v/tag/bioexcel/biobb_analysis?label=Version)](https://GitHub.com/bioexcel/biobb_analysis/tags/)
+[![](https://img.shields.io/pypi/v/biobb-analysis.svg?label=Pypi)](https://pypi.python.org/pypi/biobb-analysis/)
+[![](https://img.shields.io/conda/vn/bioconda/biobb_analysis?label=Conda)](https://anaconda.org/bioconda/biobb_analysis)
+[![](https://img.shields.io/conda/dn/bioconda/biobb_analysis?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_analysis)
+[![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_analysis?tab=tags)
+[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_analysis:4.0.1--pyhdfd78af_1)
+
+[![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_analysis)
+[![](https://img.shields.io/pypi/pyversions/biobb-analysis.svg?label=Python%20Versions)](https://pypi.org/project/biobb-analysis/)
+[![](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
+[![](https://img.shields.io/badge/Open%20Source%3f-Yes!-blue)](https://github.com/bioexcel/biobb_analysis)
+
+[![](https://readthedocs.org/projects/biobb-analysis/badge/?version=latest&label=Docs)](https://biobb-analysis.readthedocs.io/en/latest/?badge=latest)
+[![](https://img.shields.io/website?down_message=Offline&label=Biobb%20Website&up_message=Online&url=https%3A%2F%2Fmmb.irbbarcelona.org%2Fbiobb%2F)](https://mmb.irbbarcelona.org/biobb/)
+[![](https://img.shields.io/badge/Youtube-tutorial-blue?logo=youtube&logoColor=red)](https://www.youtube.com/watch?v=ou1DOGNs0xM)
+[![](https://zenodo.org/badge/DOI/10.1038/s41597-019-0177-4.svg)](https://doi.org/10.1038/s41597-019-0177-4)
+[![](https://img.shields.io/endpoint?color=brightgreen&url=https%3A%2F%2Fapi.juleskreuer.eu%2Fcitation-badge.php%3Fshield%26doi%3D10.1038%2Fs41597-019-0177-4)](https://www.nature.com/articles/s41597-019-0177-4#citeas)
+
+[![](https://docs.bioexcel.eu/biobb_analysis/junit/testsbadge.svg)](https://docs.bioexcel.eu/biobb_analysis/junit/report.html)
+[![](https://docs.bioexcel.eu/biobb_analysis/coverage/coveragebadge.svg)](https://docs.bioexcel.eu/biobb_analysis/coverage/)
+[![](https://docs.bioexcel.eu/biobb_analysis/flake8/flake8badge.svg)](https://docs.bioexcel.eu/biobb_analysis/flake8/)
+[![](https://img.shields.io/github/last-commit/bioexcel/biobb_analysis?label=Last%20Commit)](https://github.com/bioexcel/biobb_analysis/commits/master)
+[![](https://img.shields.io/github/issues/bioexcel/biobb_analysis.svg?color=brightgreen&label=Issues)](https://GitHub.com/bioexcel/biobb_analysis/issues/)
+
+
+# biobb_analysis
+
+### Introduction
+Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations.
+Biobb (BioExcel building blocks) packages are Python building blocks that
+create new layer of compatibility and interoperability over popular
+bioinformatics tools.
+The latest documentation of this package can be found in our readthedocs site:
+[latest API documentation](http://biobb_analysis.readthedocs.io/en/latest/).
+
+### Version
+v4.0.1 2023.1
+
+### Installation
+Using PIP:
+
+> **Important:** PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA, DOCKER or SINGULARITY.
+
+* Installation:
+
+
+        pip install "biobb_analysis>=4.0.1"
+
+
+* Usage: [Python API documentation](https://biobb-analysis.readthedocs.io/en/latest/modules.html)
+
+Using ANACONDA:
+
+* Installation:
+
+
+        conda install -c bioconda "biobb_analysis>=4.0.1"
+
+
+* Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-analysis.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-analysis.readthedocs.io/en/latest/command_line.html)
+
+Using DOCKER:
+
+* Installation:
+
+
+        docker pull quay.io/biocontainers/biobb_analysis:4.0.1--pyhdfd78af_1
+
+
+* Usage:
+
+
+        docker run quay.io/biocontainers/biobb_analysis:4.0.1--pyhdfd78af_1 <command>
+
+
+Using SINGULARITY:
+
+**MacOS users**: it's strongly recommended to avoid Singularity and use **Docker** as containerization system.
+
+* Installation:
+
+
+        singularity pull --name biobb_analysis.sif https://depot.galaxyproject.org/singularity/biobb_analysis:4.0.1--pyhdfd78af_1
+
+
+* Usage:
+
+
+        singularity exec biobb_analysis.sif <command>
+
+
+The command list and specification can be found at the [Command Line documentation](https://biobb-analysis.readthedocs.io/en/latest/command_line.html).
+
+### Copyright & Licensing
+This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).
+
+* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)
+* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)
+
+Licensed under the
+[Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.
+
+![](https://bioexcel.eu/wp-content/uploads/2019/04/Bioexcell_logo_1080px_transp.png "Bioexcel")
+
+
+
+
+%package -n python3-biobb-analysis
+Summary:	Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations.
+Provides:	python-biobb-analysis
+BuildRequires:	python3-devel
+BuildRequires:	python3-setuptools
+BuildRequires:	python3-pip
+%description -n python3-biobb-analysis
+[![](https://img.shields.io/github/v/tag/bioexcel/biobb_analysis?label=Version)](https://GitHub.com/bioexcel/biobb_analysis/tags/)
+[![](https://img.shields.io/pypi/v/biobb-analysis.svg?label=Pypi)](https://pypi.python.org/pypi/biobb-analysis/)
+[![](https://img.shields.io/conda/vn/bioconda/biobb_analysis?label=Conda)](https://anaconda.org/bioconda/biobb_analysis)
+[![](https://img.shields.io/conda/dn/bioconda/biobb_analysis?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_analysis)
+[![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_analysis?tab=tags)
+[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_analysis:4.0.1--pyhdfd78af_1)
+
+[![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_analysis)
+[![](https://img.shields.io/pypi/pyversions/biobb-analysis.svg?label=Python%20Versions)](https://pypi.org/project/biobb-analysis/)
+[![](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
+[![](https://img.shields.io/badge/Open%20Source%3f-Yes!-blue)](https://github.com/bioexcel/biobb_analysis)
+
+[![](https://readthedocs.org/projects/biobb-analysis/badge/?version=latest&label=Docs)](https://biobb-analysis.readthedocs.io/en/latest/?badge=latest)
+[![](https://img.shields.io/website?down_message=Offline&label=Biobb%20Website&up_message=Online&url=https%3A%2F%2Fmmb.irbbarcelona.org%2Fbiobb%2F)](https://mmb.irbbarcelona.org/biobb/)
+[![](https://img.shields.io/badge/Youtube-tutorial-blue?logo=youtube&logoColor=red)](https://www.youtube.com/watch?v=ou1DOGNs0xM)
+[![](https://zenodo.org/badge/DOI/10.1038/s41597-019-0177-4.svg)](https://doi.org/10.1038/s41597-019-0177-4)
+[![](https://img.shields.io/endpoint?color=brightgreen&url=https%3A%2F%2Fapi.juleskreuer.eu%2Fcitation-badge.php%3Fshield%26doi%3D10.1038%2Fs41597-019-0177-4)](https://www.nature.com/articles/s41597-019-0177-4#citeas)
+
+[![](https://docs.bioexcel.eu/biobb_analysis/junit/testsbadge.svg)](https://docs.bioexcel.eu/biobb_analysis/junit/report.html)
+[![](https://docs.bioexcel.eu/biobb_analysis/coverage/coveragebadge.svg)](https://docs.bioexcel.eu/biobb_analysis/coverage/)
+[![](https://docs.bioexcel.eu/biobb_analysis/flake8/flake8badge.svg)](https://docs.bioexcel.eu/biobb_analysis/flake8/)
+[![](https://img.shields.io/github/last-commit/bioexcel/biobb_analysis?label=Last%20Commit)](https://github.com/bioexcel/biobb_analysis/commits/master)
+[![](https://img.shields.io/github/issues/bioexcel/biobb_analysis.svg?color=brightgreen&label=Issues)](https://GitHub.com/bioexcel/biobb_analysis/issues/)
+
+
+# biobb_analysis
+
+### Introduction
+Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations.
+Biobb (BioExcel building blocks) packages are Python building blocks that
+create new layer of compatibility and interoperability over popular
+bioinformatics tools.
+The latest documentation of this package can be found in our readthedocs site:
+[latest API documentation](http://biobb_analysis.readthedocs.io/en/latest/).
+
+### Version
+v4.0.1 2023.1
+
+### Installation
+Using PIP:
+
+> **Important:** PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA, DOCKER or SINGULARITY.
+
+* Installation:
+
+
+        pip install "biobb_analysis>=4.0.1"
+
+
+* Usage: [Python API documentation](https://biobb-analysis.readthedocs.io/en/latest/modules.html)
+
+Using ANACONDA:
+
+* Installation:
+
+
+        conda install -c bioconda "biobb_analysis>=4.0.1"
+
+
+* Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-analysis.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-analysis.readthedocs.io/en/latest/command_line.html)
+
+Using DOCKER:
+
+* Installation:
+
+
+        docker pull quay.io/biocontainers/biobb_analysis:4.0.1--pyhdfd78af_1
+
+
+* Usage:
+
+
+        docker run quay.io/biocontainers/biobb_analysis:4.0.1--pyhdfd78af_1 <command>
+
+
+Using SINGULARITY:
+
+**MacOS users**: it's strongly recommended to avoid Singularity and use **Docker** as containerization system.
+
+* Installation:
+
+
+        singularity pull --name biobb_analysis.sif https://depot.galaxyproject.org/singularity/biobb_analysis:4.0.1--pyhdfd78af_1
+
+
+* Usage:
+
+
+        singularity exec biobb_analysis.sif <command>
+
+
+The command list and specification can be found at the [Command Line documentation](https://biobb-analysis.readthedocs.io/en/latest/command_line.html).
+
+### Copyright & Licensing
+This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).
+
+* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)
+* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)
+
+Licensed under the
+[Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.
+
+![](https://bioexcel.eu/wp-content/uploads/2019/04/Bioexcell_logo_1080px_transp.png "Bioexcel")
+
+
+
+
+%package help
+Summary:	Development documents and examples for biobb-analysis
+Provides:	python3-biobb-analysis-doc
+%description help
+[![](https://img.shields.io/github/v/tag/bioexcel/biobb_analysis?label=Version)](https://GitHub.com/bioexcel/biobb_analysis/tags/)
+[![](https://img.shields.io/pypi/v/biobb-analysis.svg?label=Pypi)](https://pypi.python.org/pypi/biobb-analysis/)
+[![](https://img.shields.io/conda/vn/bioconda/biobb_analysis?label=Conda)](https://anaconda.org/bioconda/biobb_analysis)
+[![](https://img.shields.io/conda/dn/bioconda/biobb_analysis?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_analysis)
+[![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_analysis?tab=tags)
+[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_analysis:4.0.1--pyhdfd78af_1)
+
+[![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_analysis)
+[![](https://img.shields.io/pypi/pyversions/biobb-analysis.svg?label=Python%20Versions)](https://pypi.org/project/biobb-analysis/)
+[![](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
+[![](https://img.shields.io/badge/Open%20Source%3f-Yes!-blue)](https://github.com/bioexcel/biobb_analysis)
+
+[![](https://readthedocs.org/projects/biobb-analysis/badge/?version=latest&label=Docs)](https://biobb-analysis.readthedocs.io/en/latest/?badge=latest)
+[![](https://img.shields.io/website?down_message=Offline&label=Biobb%20Website&up_message=Online&url=https%3A%2F%2Fmmb.irbbarcelona.org%2Fbiobb%2F)](https://mmb.irbbarcelona.org/biobb/)
+[![](https://img.shields.io/badge/Youtube-tutorial-blue?logo=youtube&logoColor=red)](https://www.youtube.com/watch?v=ou1DOGNs0xM)
+[![](https://zenodo.org/badge/DOI/10.1038/s41597-019-0177-4.svg)](https://doi.org/10.1038/s41597-019-0177-4)
+[![](https://img.shields.io/endpoint?color=brightgreen&url=https%3A%2F%2Fapi.juleskreuer.eu%2Fcitation-badge.php%3Fshield%26doi%3D10.1038%2Fs41597-019-0177-4)](https://www.nature.com/articles/s41597-019-0177-4#citeas)
+
+[![](https://docs.bioexcel.eu/biobb_analysis/junit/testsbadge.svg)](https://docs.bioexcel.eu/biobb_analysis/junit/report.html)
+[![](https://docs.bioexcel.eu/biobb_analysis/coverage/coveragebadge.svg)](https://docs.bioexcel.eu/biobb_analysis/coverage/)
+[![](https://docs.bioexcel.eu/biobb_analysis/flake8/flake8badge.svg)](https://docs.bioexcel.eu/biobb_analysis/flake8/)
+[![](https://img.shields.io/github/last-commit/bioexcel/biobb_analysis?label=Last%20Commit)](https://github.com/bioexcel/biobb_analysis/commits/master)
+[![](https://img.shields.io/github/issues/bioexcel/biobb_analysis.svg?color=brightgreen&label=Issues)](https://GitHub.com/bioexcel/biobb_analysis/issues/)
+
+
+# biobb_analysis
+
+### Introduction
+Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations.
+Biobb (BioExcel building blocks) packages are Python building blocks that
+create new layer of compatibility and interoperability over popular
+bioinformatics tools.
+The latest documentation of this package can be found in our readthedocs site:
+[latest API documentation](http://biobb_analysis.readthedocs.io/en/latest/).
+
+### Version
+v4.0.1 2023.1
+
+### Installation
+Using PIP:
+
+> **Important:** PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA, DOCKER or SINGULARITY.
+
+* Installation:
+
+
+        pip install "biobb_analysis>=4.0.1"
+
+
+* Usage: [Python API documentation](https://biobb-analysis.readthedocs.io/en/latest/modules.html)
+
+Using ANACONDA:
+
+* Installation:
+
+
+        conda install -c bioconda "biobb_analysis>=4.0.1"
+
+
+* Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-analysis.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-analysis.readthedocs.io/en/latest/command_line.html)
+
+Using DOCKER:
+
+* Installation:
+
+
+        docker pull quay.io/biocontainers/biobb_analysis:4.0.1--pyhdfd78af_1
+
+
+* Usage:
+
+
+        docker run quay.io/biocontainers/biobb_analysis:4.0.1--pyhdfd78af_1 <command>
+
+
+Using SINGULARITY:
+
+**MacOS users**: it's strongly recommended to avoid Singularity and use **Docker** as containerization system.
+
+* Installation:
+
+
+        singularity pull --name biobb_analysis.sif https://depot.galaxyproject.org/singularity/biobb_analysis:4.0.1--pyhdfd78af_1
+
+
+* Usage:
+
+
+        singularity exec biobb_analysis.sif <command>
+
+
+The command list and specification can be found at the [Command Line documentation](https://biobb-analysis.readthedocs.io/en/latest/command_line.html).
+
+### Copyright & Licensing
+This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).
+
+* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)
+* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)
+
+Licensed under the
+[Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.
+
+![](https://bioexcel.eu/wp-content/uploads/2019/04/Bioexcell_logo_1080px_transp.png "Bioexcel")
+
+
+
+
+%prep
+%autosetup -n biobb_analysis-4.0.1
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+	find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+	find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+	find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+	find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+	find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-biobb-analysis -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Fri Jun 09 2023 Python_Bot <Python_Bot@openeuler.org> - 4.0.1-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..35ab3fa
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+ffc080a6f8a6c3bd46a750f44999b57a  biobb_analysis-4.0.1.tar.gz