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diff --git a/python-biobb-pmx.spec b/python-biobb-pmx.spec new file mode 100644 index 0000000..cc963c2 --- /dev/null +++ b/python-biobb-pmx.spec @@ -0,0 +1,325 @@ +%global _empty_manifest_terminate_build 0 +Name: python-biobb-pmx +Version: 3.8.1 +Release: 1 +Summary: Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions. +License: Apache Software License +URL: https://github.com/bioexcel/biobb_pmx +Source0: https://mirrors.aliyun.com/pypi/web/packages/4c/bf/0cd5c2f2adf3995be6e0df092e2db4a06fae039756be1c076d734d249409/biobb_pmx-3.8.1.tar.gz +BuildArch: noarch + +Requires: python3-biobb-common + +%description +[](https://biobb-pmx.readthedocs.io/en/latest/?badge=latest) +[](https://anaconda.org/bioconda/biobb_pmx) +[](https://quay.io/repository/biocontainers/biobb_pmx) +[](https://opensource.org/licenses/Apache-2.0) + +# biobb_pmx + +### Introduction +Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions. +Biobb (BioExcel building blocks) packages are Python building blocks that +create new layer of compatibility and interoperability over popular +bioinformatics tools. +The latest documentation of this package can be found in our readthedocs site: +[latest API documentation](http://biobb_pmx.readthedocs.io/en/latest/). + +### Version +v3.8.1 2022.3 + +### Installation +Using PIP: + +> **Important:** PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA or DOCKER. + +* Installation: + + pip install "biobb_pmx>=3.8.1" + + +* Usage: [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) + +Using ANACONDA: + +* Installation: + + + conda install -c bioconda "biobb_pmx>=3.8.1" + + +* Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-pmx.readthedocs.io/en/latest/command_line.html) + +Using DOCKER: + +* Installation: + + + docker pull quay.io/biocontainers/biobb_pmx:3.8.1--pyhdfd78af_0 + + +* Usage: + + + docker run quay.io/biocontainers/biobb_pmx:3.8.1--pyhdfd78af_0 <command> + + +[//]: # (Using SINGULARITY:) + +[//]: # (**MacOS users**: it's strongly recommended to avoid Singularity and use **Docker** as containerization system.) + +[//]: # (* Installation:) + + +[//]: # (singularity pull --name biobb_pmx.sif shub://bioexcel/biobb_pmx) + + +[//]: # (* Usage:) + +[//]: # (singularity exec biobb_pmx.sif <command>) + + +The command list and specification can be found at the [Command Line documentation](https://biobb-pmx.readthedocs.io/en/latest/command_line.html). + + +### Copyright & Licensing +This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)). + +* (c) 2015-2021 [Barcelona Supercomputing Center](https://www.bsc.es/) +* (c) 2015-2021 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) + +Licensed under the +[Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details. + + + + + + +%package -n python3-biobb-pmx +Summary: Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions. +Provides: python-biobb-pmx +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-biobb-pmx +[](https://biobb-pmx.readthedocs.io/en/latest/?badge=latest) +[](https://anaconda.org/bioconda/biobb_pmx) +[](https://quay.io/repository/biocontainers/biobb_pmx) +[](https://opensource.org/licenses/Apache-2.0) + +# biobb_pmx + +### Introduction +Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions. +Biobb (BioExcel building blocks) packages are Python building blocks that +create new layer of compatibility and interoperability over popular +bioinformatics tools. +The latest documentation of this package can be found in our readthedocs site: +[latest API documentation](http://biobb_pmx.readthedocs.io/en/latest/). + +### Version +v3.8.1 2022.3 + +### Installation +Using PIP: + +> **Important:** PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA or DOCKER. + +* Installation: + + pip install "biobb_pmx>=3.8.1" + + +* Usage: [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) + +Using ANACONDA: + +* Installation: + + + conda install -c bioconda "biobb_pmx>=3.8.1" + + +* Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-pmx.readthedocs.io/en/latest/command_line.html) + +Using DOCKER: + +* Installation: + + + docker pull quay.io/biocontainers/biobb_pmx:3.8.1--pyhdfd78af_0 + + +* Usage: + + + docker run quay.io/biocontainers/biobb_pmx:3.8.1--pyhdfd78af_0 <command> + + +[//]: # (Using SINGULARITY:) + +[//]: # (**MacOS users**: it's strongly recommended to avoid Singularity and use **Docker** as containerization system.) + +[//]: # (* Installation:) + + +[//]: # (singularity pull --name biobb_pmx.sif shub://bioexcel/biobb_pmx) + + +[//]: # (* Usage:) + +[//]: # (singularity exec biobb_pmx.sif <command>) + + +The command list and specification can be found at the [Command Line documentation](https://biobb-pmx.readthedocs.io/en/latest/command_line.html). + + +### Copyright & Licensing +This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)). + +* (c) 2015-2021 [Barcelona Supercomputing Center](https://www.bsc.es/) +* (c) 2015-2021 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) + +Licensed under the +[Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details. + + + + + + +%package help +Summary: Development documents and examples for biobb-pmx +Provides: python3-biobb-pmx-doc +%description help +[](https://biobb-pmx.readthedocs.io/en/latest/?badge=latest) +[](https://anaconda.org/bioconda/biobb_pmx) +[](https://quay.io/repository/biocontainers/biobb_pmx) +[](https://opensource.org/licenses/Apache-2.0) + +# biobb_pmx + +### Introduction +Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions. +Biobb (BioExcel building blocks) packages are Python building blocks that +create new layer of compatibility and interoperability over popular +bioinformatics tools. +The latest documentation of this package can be found in our readthedocs site: +[latest API documentation](http://biobb_pmx.readthedocs.io/en/latest/). + +### Version +v3.8.1 2022.3 + +### Installation +Using PIP: + +> **Important:** PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA or DOCKER. + +* Installation: + + pip install "biobb_pmx>=3.8.1" + + +* Usage: [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) + +Using ANACONDA: + +* Installation: + + + conda install -c bioconda "biobb_pmx>=3.8.1" + + +* Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-pmx.readthedocs.io/en/latest/command_line.html) + +Using DOCKER: + +* Installation: + + + docker pull quay.io/biocontainers/biobb_pmx:3.8.1--pyhdfd78af_0 + + +* Usage: + + + docker run quay.io/biocontainers/biobb_pmx:3.8.1--pyhdfd78af_0 <command> + + +[//]: # (Using SINGULARITY:) + +[//]: # (**MacOS users**: it's strongly recommended to avoid Singularity and use **Docker** as containerization system.) + +[//]: # (* Installation:) + + +[//]: # (singularity pull --name biobb_pmx.sif shub://bioexcel/biobb_pmx) + + +[//]: # (* Usage:) + +[//]: # (singularity exec biobb_pmx.sif <command>) + + +The command list and specification can be found at the [Command Line documentation](https://biobb-pmx.readthedocs.io/en/latest/command_line.html). + + +### Copyright & Licensing +This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)). + +* (c) 2015-2021 [Barcelona Supercomputing Center](https://www.bsc.es/) +* (c) 2015-2021 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) + +Licensed under the +[Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details. + + + + + + +%prep +%autosetup -n biobb_pmx-3.8.1 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-biobb-pmx -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Tue Jun 20 2023 Python_Bot <Python_Bot@openeuler.org> - 3.8.1-1 +- Package Spec generated |