automatic import of python-bioformats-jaropeneuler20.03

3 files changed, 248 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
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+/bioformats_jar-2020.5.27.tar.gz
diff --git a/python-bioformats-jar.spec b/python-bioformats-jar.spec
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+%global _empty_manifest_terminate_build 0
+Name:		python-bioformats-jar
+Version:	2020.5.27
+Release:	1
+Summary:	bioformats_package.jar installer for scyjava
+License:	GPL-2.0
+URL:		https://github.com/tlambert03/bioformats_jar
+Source0:	https://mirrors.aliyun.com/pypi/web/packages/b5/10/0f7b9521bc51d768130bd405122dcde00f6fe9b51de514fccf32f2e531d2/bioformats_jar-2020.5.27.tar.gz
+BuildArch:	noarch
+
+Requires:	python3-scyjava
+Requires:	python3-pytest
+Requires:	python3-pytest-cov
+
+%description
+# bioformats_jar
+
+[![License](https://img.shields.io/pypi/l/bioformats_jar.svg?color=green)](https://github.com/tlambert03/bioformats_jar/raw/master/LICENSE)
+[![PyPI](https://img.shields.io/pypi/v/bioformats_jar.svg?color=green)](https://pypi.org/project/bioformats_jar)
+[![Python Version](https://img.shields.io/pypi/pyversions/bioformats_jar.svg?color=green)](https://python.org)
+[![CI](https://github.com/tlambert03/bioformats_jar/actions/workflows/ci.yml/badge.svg)](https://github.com/tlambert03/bioformats_jar/actions/workflows/ci.yml)
+
+## deprecated
+
+This package is deprecated.  You should use [scyjava](https://github.com/scijava/scyjava) to download and import jars.  The functionality in this
+package can be accomplished using scyjava as follows:
+
+```python
+import jpype
+import scyjava
+
+scyjava.config.endpoints.append('ome:formats-gpl:6.7.0')
+scyjava.start_jvm()
+loci = jpype.JPackage("loci")
+loci.common.DebugTools.setRootLevel("ERROR")
+```
+
+This package remains only for packages that already depend on it.
+
+## usage
+
+```python
+from bioformats_jar import get_loci, set_loci_log_level
+
+# start the JVM and get the loci module
+loci = get_loci()
+
+# optionally:
+set_loci_log_level("DEBUG")  # by default "ERROR"
+```
+
+The following environment variables can also be used:
+
+- `BIOFORMATS_VERSION` - version of bioformats to use.  by default "LATEST"
+- `BIOFORMATS_LOG_LEVEL` - logging level for loci tools. by default "ERROR"
+- `BIOFORMATS_LICENSE` - license version of bioformats to use.  must be either
+  `"gpl"` or `"bsd"`.  By default `"gpl"`
+
+*see also:*
+
+- [Bioformats Docs](https://docs.openmicroscopy.org/bio-formats/latest)
+- [Javadocs](https://downloads.openmicroscopy.org/bio-formats/latest/api/) with the loci API
+
+## install
+
+```sh
+pip install bioformats-jar
+```
+
+```sh
+conda install -c conda-forge bioformats-jar
+```
+
+
+%package -n python3-bioformats-jar
+Summary:	bioformats_package.jar installer for scyjava
+Provides:	python-bioformats-jar
+BuildRequires:	python3-devel
+BuildRequires:	python3-setuptools
+BuildRequires:	python3-pip
+%description -n python3-bioformats-jar
+# bioformats_jar
+
+[![License](https://img.shields.io/pypi/l/bioformats_jar.svg?color=green)](https://github.com/tlambert03/bioformats_jar/raw/master/LICENSE)
+[![PyPI](https://img.shields.io/pypi/v/bioformats_jar.svg?color=green)](https://pypi.org/project/bioformats_jar)
+[![Python Version](https://img.shields.io/pypi/pyversions/bioformats_jar.svg?color=green)](https://python.org)
+[![CI](https://github.com/tlambert03/bioformats_jar/actions/workflows/ci.yml/badge.svg)](https://github.com/tlambert03/bioformats_jar/actions/workflows/ci.yml)
+
+## deprecated
+
+This package is deprecated.  You should use [scyjava](https://github.com/scijava/scyjava) to download and import jars.  The functionality in this
+package can be accomplished using scyjava as follows:
+
+```python
+import jpype
+import scyjava
+
+scyjava.config.endpoints.append('ome:formats-gpl:6.7.0')
+scyjava.start_jvm()
+loci = jpype.JPackage("loci")
+loci.common.DebugTools.setRootLevel("ERROR")
+```
+
+This package remains only for packages that already depend on it.
+
+## usage
+
+```python
+from bioformats_jar import get_loci, set_loci_log_level
+
+# start the JVM and get the loci module
+loci = get_loci()
+
+# optionally:
+set_loci_log_level("DEBUG")  # by default "ERROR"
+```
+
+The following environment variables can also be used:
+
+- `BIOFORMATS_VERSION` - version of bioformats to use.  by default "LATEST"
+- `BIOFORMATS_LOG_LEVEL` - logging level for loci tools. by default "ERROR"
+- `BIOFORMATS_LICENSE` - license version of bioformats to use.  must be either
+  `"gpl"` or `"bsd"`.  By default `"gpl"`
+
+*see also:*
+
+- [Bioformats Docs](https://docs.openmicroscopy.org/bio-formats/latest)
+- [Javadocs](https://downloads.openmicroscopy.org/bio-formats/latest/api/) with the loci API
+
+## install
+
+```sh
+pip install bioformats-jar
+```
+
+```sh
+conda install -c conda-forge bioformats-jar
+```
+
+
+%package help
+Summary:	Development documents and examples for bioformats-jar
+Provides:	python3-bioformats-jar-doc
+%description help
+# bioformats_jar
+
+[![License](https://img.shields.io/pypi/l/bioformats_jar.svg?color=green)](https://github.com/tlambert03/bioformats_jar/raw/master/LICENSE)
+[![PyPI](https://img.shields.io/pypi/v/bioformats_jar.svg?color=green)](https://pypi.org/project/bioformats_jar)
+[![Python Version](https://img.shields.io/pypi/pyversions/bioformats_jar.svg?color=green)](https://python.org)
+[![CI](https://github.com/tlambert03/bioformats_jar/actions/workflows/ci.yml/badge.svg)](https://github.com/tlambert03/bioformats_jar/actions/workflows/ci.yml)
+
+## deprecated
+
+This package is deprecated.  You should use [scyjava](https://github.com/scijava/scyjava) to download and import jars.  The functionality in this
+package can be accomplished using scyjava as follows:
+
+```python
+import jpype
+import scyjava
+
+scyjava.config.endpoints.append('ome:formats-gpl:6.7.0')
+scyjava.start_jvm()
+loci = jpype.JPackage("loci")
+loci.common.DebugTools.setRootLevel("ERROR")
+```
+
+This package remains only for packages that already depend on it.
+
+## usage
+
+```python
+from bioformats_jar import get_loci, set_loci_log_level
+
+# start the JVM and get the loci module
+loci = get_loci()
+
+# optionally:
+set_loci_log_level("DEBUG")  # by default "ERROR"
+```
+
+The following environment variables can also be used:
+
+- `BIOFORMATS_VERSION` - version of bioformats to use.  by default "LATEST"
+- `BIOFORMATS_LOG_LEVEL` - logging level for loci tools. by default "ERROR"
+- `BIOFORMATS_LICENSE` - license version of bioformats to use.  must be either
+  `"gpl"` or `"bsd"`.  By default `"gpl"`
+
+*see also:*
+
+- [Bioformats Docs](https://docs.openmicroscopy.org/bio-formats/latest)
+- [Javadocs](https://downloads.openmicroscopy.org/bio-formats/latest/api/) with the loci API
+
+## install
+
+```sh
+pip install bioformats-jar
+```
+
+```sh
+conda install -c conda-forge bioformats-jar
+```
+
+
+%prep
+%autosetup -n bioformats_jar-2020.5.27
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+	find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+	find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+	find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+	find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+	find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-bioformats-jar -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Tue Jun 20 2023 Python_Bot <Python_Bot@openeuler.org> - 2020.5.27-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..e3465d8
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+++ b/sources
@@ -0,0 +1 @@
+47690efaf23a00b0d43ec3a174decc02  bioformats_jar-2020.5.27.tar.gz