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diff --git a/python-biometadb.spec b/python-biometadb.spec new file mode 100644 index 0000000..8ce6870 --- /dev/null +++ b/python-biometadb.spec @@ -0,0 +1,114 @@ +%global _empty_manifest_terminate_build 0 +Name: python-BioMetaDB +Version: 0.1.3.0 +Release: 1 +Summary: Use biological data to generate SQL database schema +License: GNU GPL 3 +URL: https://github.com/cjneely10/BioMetaDB +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/dd/9b/fbd18a41fa7f4c6f3af9437dca5f380c9ec80809d88a6d7eac09e076f354/BioMetaDB-0.1.3.0.tar.gz +BuildArch: noarch + + +%description + - Required flags + - --match (-m): Comma-separated list of strings that must be found in issue to make edit + - --replace (-r): Comma-separated list of strings with FIX_TYPE and value to use + - --fix_file (-f): `.fix` file output by `dbdm INTEGRITY` + - Example + - `edit_fix_file.py -m RECORD,BAD_TYPE,table_name -r SET,fasta -f /path/to/########.###.fix` + - This command will replace the default fix value for issues with descriptions matching `RECORD`, `BAD_TYPE`, and + `table_name`. This fix value will be replaced with `SET fasta`. + - Another (more complex) example + - `edit_fix_file.py -m RECORD,BAD_LOCATION,genomic -r "FILE,/path/to/<ID>.fna" -f /path/to/########.###.fix` + - This command will replace the file locations for records with issues in the genomic table. It will replace + the default fix value with a file location whose value is created using the ID field of that particular issue. + Notice that the argument passed with `-r` is surrounded by double-quotes. +### Contact +This project was designed and written by Christopher Neely. Email me anytime at `christopher.neely1200@gmail.com`. + +%package -n python3-BioMetaDB +Summary: Use biological data to generate SQL database schema +Provides: python-BioMetaDB +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-BioMetaDB + - Required flags + - --match (-m): Comma-separated list of strings that must be found in issue to make edit + - --replace (-r): Comma-separated list of strings with FIX_TYPE and value to use + - --fix_file (-f): `.fix` file output by `dbdm INTEGRITY` + - Example + - `edit_fix_file.py -m RECORD,BAD_TYPE,table_name -r SET,fasta -f /path/to/########.###.fix` + - This command will replace the default fix value for issues with descriptions matching `RECORD`, `BAD_TYPE`, and + `table_name`. This fix value will be replaced with `SET fasta`. + - Another (more complex) example + - `edit_fix_file.py -m RECORD,BAD_LOCATION,genomic -r "FILE,/path/to/<ID>.fna" -f /path/to/########.###.fix` + - This command will replace the file locations for records with issues in the genomic table. It will replace + the default fix value with a file location whose value is created using the ID field of that particular issue. + Notice that the argument passed with `-r` is surrounded by double-quotes. +### Contact +This project was designed and written by Christopher Neely. Email me anytime at `christopher.neely1200@gmail.com`. + +%package help +Summary: Development documents and examples for BioMetaDB +Provides: python3-BioMetaDB-doc +%description help + - Required flags + - --match (-m): Comma-separated list of strings that must be found in issue to make edit + - --replace (-r): Comma-separated list of strings with FIX_TYPE and value to use + - --fix_file (-f): `.fix` file output by `dbdm INTEGRITY` + - Example + - `edit_fix_file.py -m RECORD,BAD_TYPE,table_name -r SET,fasta -f /path/to/########.###.fix` + - This command will replace the default fix value for issues with descriptions matching `RECORD`, `BAD_TYPE`, and + `table_name`. This fix value will be replaced with `SET fasta`. + - Another (more complex) example + - `edit_fix_file.py -m RECORD,BAD_LOCATION,genomic -r "FILE,/path/to/<ID>.fna" -f /path/to/########.###.fix` + - This command will replace the file locations for records with issues in the genomic table. It will replace + the default fix value with a file location whose value is created using the ID field of that particular issue. + Notice that the argument passed with `-r` is surrounded by double-quotes. +### Contact +This project was designed and written by Christopher Neely. Email me anytime at `christopher.neely1200@gmail.com`. + +%prep +%autosetup -n BioMetaDB-0.1.3.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-BioMetaDB -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 0.1.3.0-1 +- Package Spec generated |