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%global _empty_manifest_terminate_build 0
Name: python-BioMetaDB
Version: 0.1.3.0
Release: 1
Summary: Use biological data to generate SQL database schema
License: GNU GPL 3
URL: https://github.com/cjneely10/BioMetaDB
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/dd/9b/fbd18a41fa7f4c6f3af9437dca5f380c9ec80809d88a6d7eac09e076f354/BioMetaDB-0.1.3.0.tar.gz
BuildArch: noarch
%description
- Required flags
- --match (-m): Comma-separated list of strings that must be found in issue to make edit
- --replace (-r): Comma-separated list of strings with FIX_TYPE and value to use
- --fix_file (-f): `.fix` file output by `dbdm INTEGRITY`
- Example
- `edit_fix_file.py -m RECORD,BAD_TYPE,table_name -r SET,fasta -f /path/to/########.###.fix`
- This command will replace the default fix value for issues with descriptions matching `RECORD`, `BAD_TYPE`, and
`table_name`. This fix value will be replaced with `SET fasta`.
- Another (more complex) example
- `edit_fix_file.py -m RECORD,BAD_LOCATION,genomic -r "FILE,/path/to/<ID>.fna" -f /path/to/########.###.fix`
- This command will replace the file locations for records with issues in the genomic table. It will replace
the default fix value with a file location whose value is created using the ID field of that particular issue.
Notice that the argument passed with `-r` is surrounded by double-quotes.
### Contact
This project was designed and written by Christopher Neely. Email me anytime at `christopher.neely1200@gmail.com`.
%package -n python3-BioMetaDB
Summary: Use biological data to generate SQL database schema
Provides: python-BioMetaDB
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-BioMetaDB
- Required flags
- --match (-m): Comma-separated list of strings that must be found in issue to make edit
- --replace (-r): Comma-separated list of strings with FIX_TYPE and value to use
- --fix_file (-f): `.fix` file output by `dbdm INTEGRITY`
- Example
- `edit_fix_file.py -m RECORD,BAD_TYPE,table_name -r SET,fasta -f /path/to/########.###.fix`
- This command will replace the default fix value for issues with descriptions matching `RECORD`, `BAD_TYPE`, and
`table_name`. This fix value will be replaced with `SET fasta`.
- Another (more complex) example
- `edit_fix_file.py -m RECORD,BAD_LOCATION,genomic -r "FILE,/path/to/<ID>.fna" -f /path/to/########.###.fix`
- This command will replace the file locations for records with issues in the genomic table. It will replace
the default fix value with a file location whose value is created using the ID field of that particular issue.
Notice that the argument passed with `-r` is surrounded by double-quotes.
### Contact
This project was designed and written by Christopher Neely. Email me anytime at `christopher.neely1200@gmail.com`.
%package help
Summary: Development documents and examples for BioMetaDB
Provides: python3-BioMetaDB-doc
%description help
- Required flags
- --match (-m): Comma-separated list of strings that must be found in issue to make edit
- --replace (-r): Comma-separated list of strings with FIX_TYPE and value to use
- --fix_file (-f): `.fix` file output by `dbdm INTEGRITY`
- Example
- `edit_fix_file.py -m RECORD,BAD_TYPE,table_name -r SET,fasta -f /path/to/########.###.fix`
- This command will replace the default fix value for issues with descriptions matching `RECORD`, `BAD_TYPE`, and
`table_name`. This fix value will be replaced with `SET fasta`.
- Another (more complex) example
- `edit_fix_file.py -m RECORD,BAD_LOCATION,genomic -r "FILE,/path/to/<ID>.fna" -f /path/to/########.###.fix`
- This command will replace the file locations for records with issues in the genomic table. It will replace
the default fix value with a file location whose value is created using the ID field of that particular issue.
Notice that the argument passed with `-r` is surrounded by double-quotes.
### Contact
This project was designed and written by Christopher Neely. Email me anytime at `christopher.neely1200@gmail.com`.
%prep
%autosetup -n BioMetaDB-0.1.3.0
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-BioMetaDB -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 0.1.3.0-1
- Package Spec generated
|
