summaryrefslogtreecommitdiff
path: root/python-ga4gh-vrsatile-pydantic.spec
blob: 179bee20959f39d1025bb582259cf98ae8891d80 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
%global _empty_manifest_terminate_build 0
Name:		python-ga4gh.vrsatile.pydantic
Version:	0.0.12
Release:	1
Summary:	"Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model"
License:	Apache Software License
URL:		https://github.com/ga4gh/vrs-pydantic
Source0:	https://mirrors.aliyun.com/pypi/web/packages/ec/b2/fc7e0aee33dfe25ee5f4287f0f001134cf5d2a75b9e389a865384caf7643/ga4gh.vrsatile.pydantic-0.0.12.tar.gz
BuildArch:	noarch

Requires:	python3-pydantic

%description
# vrsatile-pydantic
Translation of the GA4GH [VRS](https://vrs.ga4gh.org/en/stable/) and [VRSATILE](https://vrsatile.readthedocs.io/en/latest/) schemas to a Pydantic data model

The ga4gh/vrsatile/pydantic repo depends on VRS and VRSATILE models, and therefore each ga4gh.vrsatile.pydantic package on PyPI uses a particular version of VRS and VRSATILE. The correspondences between the packages may be summarized as:

| ga4gh.vrsatile.pydantic branch | ga4gh.vrsatile.pydantic version | VRS version | VRSATILE version |
| ---- | --- | --- | --- |
| main | 0.0.X | [1.X.X](https://github.com/ga4gh/vrs) | [main](https://github.com/ga4gh/vrsatile/tree/main) |
| metaschema-update | 0.1.X | [metaschema-update](https://github.com/ga4gh/vrs/tree/metaschema-update) | [metaschema-update](https://github.com/ga4gh/vrsatile/tree/metaschema-update) |


## Installation

vrsatile-pydantic is available via PyPI:
```commandline
pip install ga4gh.vrsatile.pydantic
```

## Developer Instructions

Following are sections include instructions specifically for developers.

### Installation

For a development install, we recommend using Pipenv. See the
[pipenv docs](https://pipenv-fork.readthedocs.io/en/latest/#install-pipenv-today)
for direction on installing pipenv in your compute environment.

Once installed, clone the repo and initialize the environment:

```commandline
git clone https://github.com/ga4gh/vrsatile-pydantic
cd vrsatile-pydantic
pipenv shell
pipenv update
pipenv install --dev
```

### Init coding style tests

Code style is managed by [flake8](https://github.com/PyCQA/flake8) and checked prior to commit.

We use [pre-commit](https://pre-commit.com/#usage) to run conformance tests.

This ensures:

* Check code style
* Check for added large files
* Detect AWS Credentials
* Detect Private Key

Before first commit run:

```commandline
pre-commit install
```

### Running unit tests

Running unit tests is as easy as pytest.

```commandline
pipenv run pytest tests
```


%package -n python3-ga4gh.vrsatile.pydantic
Summary:	"Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model"
Provides:	python-ga4gh.vrsatile.pydantic
BuildRequires:	python3-devel
BuildRequires:	python3-setuptools
BuildRequires:	python3-pip
%description -n python3-ga4gh.vrsatile.pydantic
# vrsatile-pydantic
Translation of the GA4GH [VRS](https://vrs.ga4gh.org/en/stable/) and [VRSATILE](https://vrsatile.readthedocs.io/en/latest/) schemas to a Pydantic data model

The ga4gh/vrsatile/pydantic repo depends on VRS and VRSATILE models, and therefore each ga4gh.vrsatile.pydantic package on PyPI uses a particular version of VRS and VRSATILE. The correspondences between the packages may be summarized as:

| ga4gh.vrsatile.pydantic branch | ga4gh.vrsatile.pydantic version | VRS version | VRSATILE version |
| ---- | --- | --- | --- |
| main | 0.0.X | [1.X.X](https://github.com/ga4gh/vrs) | [main](https://github.com/ga4gh/vrsatile/tree/main) |
| metaschema-update | 0.1.X | [metaschema-update](https://github.com/ga4gh/vrs/tree/metaschema-update) | [metaschema-update](https://github.com/ga4gh/vrsatile/tree/metaschema-update) |


## Installation

vrsatile-pydantic is available via PyPI:
```commandline
pip install ga4gh.vrsatile.pydantic
```

## Developer Instructions

Following are sections include instructions specifically for developers.

### Installation

For a development install, we recommend using Pipenv. See the
[pipenv docs](https://pipenv-fork.readthedocs.io/en/latest/#install-pipenv-today)
for direction on installing pipenv in your compute environment.

Once installed, clone the repo and initialize the environment:

```commandline
git clone https://github.com/ga4gh/vrsatile-pydantic
cd vrsatile-pydantic
pipenv shell
pipenv update
pipenv install --dev
```

### Init coding style tests

Code style is managed by [flake8](https://github.com/PyCQA/flake8) and checked prior to commit.

We use [pre-commit](https://pre-commit.com/#usage) to run conformance tests.

This ensures:

* Check code style
* Check for added large files
* Detect AWS Credentials
* Detect Private Key

Before first commit run:

```commandline
pre-commit install
```

### Running unit tests

Running unit tests is as easy as pytest.

```commandline
pipenv run pytest tests
```


%package help
Summary:	Development documents and examples for ga4gh.vrsatile.pydantic
Provides:	python3-ga4gh.vrsatile.pydantic-doc
%description help
# vrsatile-pydantic
Translation of the GA4GH [VRS](https://vrs.ga4gh.org/en/stable/) and [VRSATILE](https://vrsatile.readthedocs.io/en/latest/) schemas to a Pydantic data model

The ga4gh/vrsatile/pydantic repo depends on VRS and VRSATILE models, and therefore each ga4gh.vrsatile.pydantic package on PyPI uses a particular version of VRS and VRSATILE. The correspondences between the packages may be summarized as:

| ga4gh.vrsatile.pydantic branch | ga4gh.vrsatile.pydantic version | VRS version | VRSATILE version |
| ---- | --- | --- | --- |
| main | 0.0.X | [1.X.X](https://github.com/ga4gh/vrs) | [main](https://github.com/ga4gh/vrsatile/tree/main) |
| metaschema-update | 0.1.X | [metaschema-update](https://github.com/ga4gh/vrs/tree/metaschema-update) | [metaschema-update](https://github.com/ga4gh/vrsatile/tree/metaschema-update) |


## Installation

vrsatile-pydantic is available via PyPI:
```commandline
pip install ga4gh.vrsatile.pydantic
```

## Developer Instructions

Following are sections include instructions specifically for developers.

### Installation

For a development install, we recommend using Pipenv. See the
[pipenv docs](https://pipenv-fork.readthedocs.io/en/latest/#install-pipenv-today)
for direction on installing pipenv in your compute environment.

Once installed, clone the repo and initialize the environment:

```commandline
git clone https://github.com/ga4gh/vrsatile-pydantic
cd vrsatile-pydantic
pipenv shell
pipenv update
pipenv install --dev
```

### Init coding style tests

Code style is managed by [flake8](https://github.com/PyCQA/flake8) and checked prior to commit.

We use [pre-commit](https://pre-commit.com/#usage) to run conformance tests.

This ensures:

* Check code style
* Check for added large files
* Detect AWS Credentials
* Detect Private Key

Before first commit run:

```commandline
pre-commit install
```

### Running unit tests

Running unit tests is as easy as pytest.

```commandline
pipenv run pytest tests
```


%prep
%autosetup -n ga4gh.vrsatile.pydantic-0.0.12

%build
%py3_build

%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
	find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
	find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
	find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
	find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
	find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .

%files -n python3-ga4gh.vrsatile.pydantic -f filelist.lst
%dir %{python3_sitelib}/*

%files help -f doclist.lst
%{_docdir}/*

%changelog
* Tue Jun 20 2023 Python_Bot <Python_Bot@openeuler.org> - 0.0.12-1
- Package Spec generated