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authorCoprDistGit <infra@openeuler.org>2023-05-15 04:13:56 +0000
committerCoprDistGit <infra@openeuler.org>2023-05-15 04:13:56 +0000
commit35ad35a5de77255fcf345b1a22ad087659ce60b6 (patch)
tree9571730e044aa877eabc7c38eda303d9f4380b7d
parent647b92a755c642775bf6ead6a751d5dec3317283 (diff)
automatic import of python-gencove
-rw-r--r--.gitignore1
-rw-r--r--python-gencove.spec206
-rw-r--r--sources1
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diff --git a/.gitignore b/.gitignore
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+/gencove-2.4.6.tar.gz
diff --git a/python-gencove.spec b/python-gencove.spec
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--- /dev/null
+++ b/python-gencove.spec
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+%global _empty_manifest_terminate_build 0
+Name: python-gencove
+Version: 2.4.6
+Release: 1
+Summary: Gencove API and CLI tool
+License: Apache 2.0
+URL: http://docs.gencove.com
+Source0: https://mirrors.nju.edu.cn/pypi/web/packages/f7/ea/cc26982facf0256ec07ef600b435586e332c3ef451a2ff1168feccbcfb67/gencove-2.4.6.tar.gz
+BuildArch: noarch
+
+Requires: python3-dateutil
+Requires: python3-six
+Requires: python3-Click
+Requires: python3-requests
+Requires: python3-boto3
+Requires: python3-progressbar2
+Requires: python3-backoff
+Requires: python3-pydantic
+
+%description
+# The Gencove CLI
+
+[![PyPI Latest Release](https://img.shields.io/pypi/v/gencove.svg)](https://pypi.org/project/gencove/)
+[![License](https://img.shields.io/pypi/l/gencove.svg)](https://github.com/gncv/gencove-cli/blob/master/LICENSE)
+
+## What is Gencove?
+
+Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS).
+
+
+The Gencove command-line interface (CLI) can be used to easily access the Gencove platform.
+
+## Main Features
+
+It is most often used for:
+* [Uploading FASTQ files](https://docs.gencove.com/main/the-gencove-cli/#uploading-fastq-files) for analysis
+* [Downloading analysis results](https://docs.gencove.com/main/the-gencove-cli/#downloading-deliverables) which include the following:
+ * Sequence (`.fastq.gz`)
+ * Alignment (`.bam`, `.bai`)
+ * Imputation (`.vcf.gz`, `.vcf.gz.tbi`, `.vcf.gz.csi`)
+* [Assigning metadata](https://docs.gencove.com/main/the-gencove-cli/#assigning-sample-metadata) to Gencove samples
+
+Before filing a bug report, please refer to the following [link](https://docs.gencove.com/main/the-gencove-cli/#filing-a-bug-report-for-the-cli). Bugs should be reported [here](https://resources.gencove.com/hc/en-us/requests/new).
+
+## Installation
+```
+# install via PyPI
+pip install gencove
+
+# updating to latest version
+pip install -U gencove
+```
+
+## Documentation
+
+Online documentation (with examples) is available at [docs.gencove.com](https://docs.gencove.com/main/introduction/)
+
+API reference for publicly available endpoints: [API Reference](https://api.gencove.com/api/v2/docs/)
+
+Comprehensive CLI Documentation available: [CLI Reference](https://docs.gencove.com/cli/)
+
+
+
+
+%package -n python3-gencove
+Summary: Gencove API and CLI tool
+Provides: python-gencove
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+%description -n python3-gencove
+# The Gencove CLI
+
+[![PyPI Latest Release](https://img.shields.io/pypi/v/gencove.svg)](https://pypi.org/project/gencove/)
+[![License](https://img.shields.io/pypi/l/gencove.svg)](https://github.com/gncv/gencove-cli/blob/master/LICENSE)
+
+## What is Gencove?
+
+Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS).
+
+
+The Gencove command-line interface (CLI) can be used to easily access the Gencove platform.
+
+## Main Features
+
+It is most often used for:
+* [Uploading FASTQ files](https://docs.gencove.com/main/the-gencove-cli/#uploading-fastq-files) for analysis
+* [Downloading analysis results](https://docs.gencove.com/main/the-gencove-cli/#downloading-deliverables) which include the following:
+ * Sequence (`.fastq.gz`)
+ * Alignment (`.bam`, `.bai`)
+ * Imputation (`.vcf.gz`, `.vcf.gz.tbi`, `.vcf.gz.csi`)
+* [Assigning metadata](https://docs.gencove.com/main/the-gencove-cli/#assigning-sample-metadata) to Gencove samples
+
+Before filing a bug report, please refer to the following [link](https://docs.gencove.com/main/the-gencove-cli/#filing-a-bug-report-for-the-cli). Bugs should be reported [here](https://resources.gencove.com/hc/en-us/requests/new).
+
+## Installation
+```
+# install via PyPI
+pip install gencove
+
+# updating to latest version
+pip install -U gencove
+```
+
+## Documentation
+
+Online documentation (with examples) is available at [docs.gencove.com](https://docs.gencove.com/main/introduction/)
+
+API reference for publicly available endpoints: [API Reference](https://api.gencove.com/api/v2/docs/)
+
+Comprehensive CLI Documentation available: [CLI Reference](https://docs.gencove.com/cli/)
+
+
+
+
+%package help
+Summary: Development documents and examples for gencove
+Provides: python3-gencove-doc
+%description help
+# The Gencove CLI
+
+[![PyPI Latest Release](https://img.shields.io/pypi/v/gencove.svg)](https://pypi.org/project/gencove/)
+[![License](https://img.shields.io/pypi/l/gencove.svg)](https://github.com/gncv/gencove-cli/blob/master/LICENSE)
+
+## What is Gencove?
+
+Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS).
+
+
+The Gencove command-line interface (CLI) can be used to easily access the Gencove platform.
+
+## Main Features
+
+It is most often used for:
+* [Uploading FASTQ files](https://docs.gencove.com/main/the-gencove-cli/#uploading-fastq-files) for analysis
+* [Downloading analysis results](https://docs.gencove.com/main/the-gencove-cli/#downloading-deliverables) which include the following:
+ * Sequence (`.fastq.gz`)
+ * Alignment (`.bam`, `.bai`)
+ * Imputation (`.vcf.gz`, `.vcf.gz.tbi`, `.vcf.gz.csi`)
+* [Assigning metadata](https://docs.gencove.com/main/the-gencove-cli/#assigning-sample-metadata) to Gencove samples
+
+Before filing a bug report, please refer to the following [link](https://docs.gencove.com/main/the-gencove-cli/#filing-a-bug-report-for-the-cli). Bugs should be reported [here](https://resources.gencove.com/hc/en-us/requests/new).
+
+## Installation
+```
+# install via PyPI
+pip install gencove
+
+# updating to latest version
+pip install -U gencove
+```
+
+## Documentation
+
+Online documentation (with examples) is available at [docs.gencove.com](https://docs.gencove.com/main/introduction/)
+
+API reference for publicly available endpoints: [API Reference](https://api.gencove.com/api/v2/docs/)
+
+Comprehensive CLI Documentation available: [CLI Reference](https://docs.gencove.com/cli/)
+
+
+
+
+%prep
+%autosetup -n gencove-2.4.6
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-gencove -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Mon May 15 2023 Python_Bot <Python_Bot@openeuler.org> - 2.4.6-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..24f7ef2
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+aaace626b3dfbffd4118e1d9fd6c03ed gencove-2.4.6.tar.gz