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authorCoprDistGit <infra@openeuler.org>2023-03-09 13:24:32 +0000
committerCoprDistGit <infra@openeuler.org>2023-03-09 13:24:32 +0000
commita5deaf70e2a5458427a0d041ab2419382015720f (patch)
treef537a3116d1a4c5ea16569c6366c22147e0fdedc
parente2eeb3e90e235b9eee8e1eb35ed7d085589bd817 (diff)
automatic import of python-klusta
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-rw-r--r--python-klusta.spec315
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diff --git a/.gitignore b/.gitignore
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+/klusta-3.0.16.tar.gz
diff --git a/python-klusta.spec b/python-klusta.spec
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+%global _empty_manifest_terminate_build 0
+Name: python-klusta
+Version: 3.0.16
+Release: 1
+Summary: Spike detection and automatic clustering for spike sorting
+License: BSD
+URL: https://klusta.cortexlab.net
+Source0: https://mirrors.nju.edu.cn/pypi/web/packages/46/d7/52ef7083c56d1bf1bf9d65c709f43c8802c45d7f5373182ddea367df2c4b/klusta-3.0.16.tar.gz
+BuildArch: noarch
+
+
+%description
+# Klusta: automatic spike sorting up to 64 channels
+
+[![Build Status](https://img.shields.io/travis/kwikteam/klusta.svg)](https://travis-ci.org/kwikteam/klusta)
+[![codecov.io](https://img.shields.io/codecov/c/github/kwikteam/klusta.svg)](http://codecov.io/github/kwikteam/klusta?branch=master)
+[![Documentation Status](https://readthedocs.org/projects/klusta/badge/?version=latest)](http://klusta.readthedocs.org/en/latest/)
+[![PyPI release](https://img.shields.io/pypi/v/klusta.svg)](https://pypi.python.org/pypi/klusta)
+[![GitHub release](https://img.shields.io/github/release/kwikteam/klusta.svg)](https://github.com/kwikteam/klusta/releases/latest)
+
+[**klusta**](https://github.com/kwikteam/klusta) is an open source package for automatic spike sorting of multielectrode neurophysiological recordings made with probes containing up to a few dozens of sites.
+
+We are also working actively on more sophisticated algorithms that will scale to hundreds/thousands of channels. This work is being done within the [phy project](https://github.com/kwikteam/phy), which is still experimental at this point.
+
+## Overview
+
+**klusta** implements the following features:
+
+* **Kwik**: An HDF5-based file format that stores the results of a spike sorting session.
+* **Spike detection** (also known as SpikeDetekt): an algorithm designed for probes containing tens of channels, based on a flood-fill algorithm in the adjacency graph formed by the recording sites in the probe.
+* **Automatic clustering** (also known as Masked KlustaKwik): an automatic clustering algorithm designed for high-dimensional structured datasets.
+
+
+## GUI
+
+You will need a GUI to visualize the spike sorting results.
+
+We have developed two GUI programs with the same features:
+
+* **phy KwikGUI**: newer project, scales to hundreds/thousands of channels, still relatively experimental. **It will be automatically installed if you follow the install instructions below.**
+* **[KlustaViewa](https://github.com/klusta-team/klustaviewa)**: widely used, but older and a bit hard to install since it relies on very old dependencies.
+
+Both GUIs work with the same **Kwik** format.
+
+
+## Quick install guide
+
+The following instructions will install both **klusta** and the **phy KwikGUI**.
+
+1. Make sure that you have [**miniconda**](http://conda.pydata.org/miniconda.html) installed. You can choose the Python 3.5 64-bit version for your operating system (Linux, Windows, or OS X).
+2. [Download the environment file.](https://raw.githubusercontent.com/kwikteam/klusta/master/installer/environment.yml)
+3. Open a terminal (on Windows, `cmd`, not Powershell) in the directory where you saved the file and type:
+
+ ```bash
+ conda env create -n klusta -f environment.yml
+ ```
+
+4. **Done**! Now, to use klusta and the phy KwikGUI, enter the directory that contains your files and type:
+
+ ```bash
+ source activate klusta # omit the `source` on Windows
+ klusta yourfile.prm # spikesort your data with a PRM file
+ phy kwik-gui yourfile.kwik # open the GUI
+ ```
+
+ See the documentation for more details.
+
+
+### Updating the software
+
+To get the latest version of the software, open a terminal and type:
+
+```
+source activate klusta # omit the `source` on Windows
+pip install klusta phy phycontrib --upgrade
+```
+
+
+## Technical details
+
+**klusta** is written in pure Python. The clustering code, written in Python and Cython, currently lives in [another repository](https://github.com/kwikteam/klustakwik2/).
+
+
+## Links
+
+* [Documentation](http://klusta.readthedocs.org/en/latest/) (work in progress)
+* [Paper in Nature Neuroscience (April 2016)](http://www.nature.com/neuro/journal/vaop/ncurrent/full/nn.4268.html)
+* [Mailing list](https://groups.google.com/forum/#!forum/klustaviewas)
+* [Sample data repository](http://phy.cortexlab.net/data/) (work in progress)
+
+
+## Credits
+
+**klusta** is developed by [Cyrille Rossant](http://cyrille.rossant.net), [Shabnam Kadir](https://iris.ucl.ac.uk/iris/browse/profile?upi=SKADI56), [Dan Goodman](http://thesamovar.net/), [Max Hunter](https://iris.ucl.ac.uk/iris/browse/profile?upi=MLDHU99), and [Kenneth Harris](https://iris.ucl.ac.uk/iris/browse/profile?upi=KDHAR02), in the [Cortexlab](https://www.ucl.ac.uk/cortexlab), University College London.
+
+%package -n python3-klusta
+Summary: Spike detection and automatic clustering for spike sorting
+Provides: python-klusta
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+%description -n python3-klusta
+# Klusta: automatic spike sorting up to 64 channels
+
+[![Build Status](https://img.shields.io/travis/kwikteam/klusta.svg)](https://travis-ci.org/kwikteam/klusta)
+[![codecov.io](https://img.shields.io/codecov/c/github/kwikteam/klusta.svg)](http://codecov.io/github/kwikteam/klusta?branch=master)
+[![Documentation Status](https://readthedocs.org/projects/klusta/badge/?version=latest)](http://klusta.readthedocs.org/en/latest/)
+[![PyPI release](https://img.shields.io/pypi/v/klusta.svg)](https://pypi.python.org/pypi/klusta)
+[![GitHub release](https://img.shields.io/github/release/kwikteam/klusta.svg)](https://github.com/kwikteam/klusta/releases/latest)
+
+[**klusta**](https://github.com/kwikteam/klusta) is an open source package for automatic spike sorting of multielectrode neurophysiological recordings made with probes containing up to a few dozens of sites.
+
+We are also working actively on more sophisticated algorithms that will scale to hundreds/thousands of channels. This work is being done within the [phy project](https://github.com/kwikteam/phy), which is still experimental at this point.
+
+## Overview
+
+**klusta** implements the following features:
+
+* **Kwik**: An HDF5-based file format that stores the results of a spike sorting session.
+* **Spike detection** (also known as SpikeDetekt): an algorithm designed for probes containing tens of channels, based on a flood-fill algorithm in the adjacency graph formed by the recording sites in the probe.
+* **Automatic clustering** (also known as Masked KlustaKwik): an automatic clustering algorithm designed for high-dimensional structured datasets.
+
+
+## GUI
+
+You will need a GUI to visualize the spike sorting results.
+
+We have developed two GUI programs with the same features:
+
+* **phy KwikGUI**: newer project, scales to hundreds/thousands of channels, still relatively experimental. **It will be automatically installed if you follow the install instructions below.**
+* **[KlustaViewa](https://github.com/klusta-team/klustaviewa)**: widely used, but older and a bit hard to install since it relies on very old dependencies.
+
+Both GUIs work with the same **Kwik** format.
+
+
+## Quick install guide
+
+The following instructions will install both **klusta** and the **phy KwikGUI**.
+
+1. Make sure that you have [**miniconda**](http://conda.pydata.org/miniconda.html) installed. You can choose the Python 3.5 64-bit version for your operating system (Linux, Windows, or OS X).
+2. [Download the environment file.](https://raw.githubusercontent.com/kwikteam/klusta/master/installer/environment.yml)
+3. Open a terminal (on Windows, `cmd`, not Powershell) in the directory where you saved the file and type:
+
+ ```bash
+ conda env create -n klusta -f environment.yml
+ ```
+
+4. **Done**! Now, to use klusta and the phy KwikGUI, enter the directory that contains your files and type:
+
+ ```bash
+ source activate klusta # omit the `source` on Windows
+ klusta yourfile.prm # spikesort your data with a PRM file
+ phy kwik-gui yourfile.kwik # open the GUI
+ ```
+
+ See the documentation for more details.
+
+
+### Updating the software
+
+To get the latest version of the software, open a terminal and type:
+
+```
+source activate klusta # omit the `source` on Windows
+pip install klusta phy phycontrib --upgrade
+```
+
+
+## Technical details
+
+**klusta** is written in pure Python. The clustering code, written in Python and Cython, currently lives in [another repository](https://github.com/kwikteam/klustakwik2/).
+
+
+## Links
+
+* [Documentation](http://klusta.readthedocs.org/en/latest/) (work in progress)
+* [Paper in Nature Neuroscience (April 2016)](http://www.nature.com/neuro/journal/vaop/ncurrent/full/nn.4268.html)
+* [Mailing list](https://groups.google.com/forum/#!forum/klustaviewas)
+* [Sample data repository](http://phy.cortexlab.net/data/) (work in progress)
+
+
+## Credits
+
+**klusta** is developed by [Cyrille Rossant](http://cyrille.rossant.net), [Shabnam Kadir](https://iris.ucl.ac.uk/iris/browse/profile?upi=SKADI56), [Dan Goodman](http://thesamovar.net/), [Max Hunter](https://iris.ucl.ac.uk/iris/browse/profile?upi=MLDHU99), and [Kenneth Harris](https://iris.ucl.ac.uk/iris/browse/profile?upi=KDHAR02), in the [Cortexlab](https://www.ucl.ac.uk/cortexlab), University College London.
+
+%package help
+Summary: Development documents and examples for klusta
+Provides: python3-klusta-doc
+%description help
+# Klusta: automatic spike sorting up to 64 channels
+
+[![Build Status](https://img.shields.io/travis/kwikteam/klusta.svg)](https://travis-ci.org/kwikteam/klusta)
+[![codecov.io](https://img.shields.io/codecov/c/github/kwikteam/klusta.svg)](http://codecov.io/github/kwikteam/klusta?branch=master)
+[![Documentation Status](https://readthedocs.org/projects/klusta/badge/?version=latest)](http://klusta.readthedocs.org/en/latest/)
+[![PyPI release](https://img.shields.io/pypi/v/klusta.svg)](https://pypi.python.org/pypi/klusta)
+[![GitHub release](https://img.shields.io/github/release/kwikteam/klusta.svg)](https://github.com/kwikteam/klusta/releases/latest)
+
+[**klusta**](https://github.com/kwikteam/klusta) is an open source package for automatic spike sorting of multielectrode neurophysiological recordings made with probes containing up to a few dozens of sites.
+
+We are also working actively on more sophisticated algorithms that will scale to hundreds/thousands of channels. This work is being done within the [phy project](https://github.com/kwikteam/phy), which is still experimental at this point.
+
+## Overview
+
+**klusta** implements the following features:
+
+* **Kwik**: An HDF5-based file format that stores the results of a spike sorting session.
+* **Spike detection** (also known as SpikeDetekt): an algorithm designed for probes containing tens of channels, based on a flood-fill algorithm in the adjacency graph formed by the recording sites in the probe.
+* **Automatic clustering** (also known as Masked KlustaKwik): an automatic clustering algorithm designed for high-dimensional structured datasets.
+
+
+## GUI
+
+You will need a GUI to visualize the spike sorting results.
+
+We have developed two GUI programs with the same features:
+
+* **phy KwikGUI**: newer project, scales to hundreds/thousands of channels, still relatively experimental. **It will be automatically installed if you follow the install instructions below.**
+* **[KlustaViewa](https://github.com/klusta-team/klustaviewa)**: widely used, but older and a bit hard to install since it relies on very old dependencies.
+
+Both GUIs work with the same **Kwik** format.
+
+
+## Quick install guide
+
+The following instructions will install both **klusta** and the **phy KwikGUI**.
+
+1. Make sure that you have [**miniconda**](http://conda.pydata.org/miniconda.html) installed. You can choose the Python 3.5 64-bit version for your operating system (Linux, Windows, or OS X).
+2. [Download the environment file.](https://raw.githubusercontent.com/kwikteam/klusta/master/installer/environment.yml)
+3. Open a terminal (on Windows, `cmd`, not Powershell) in the directory where you saved the file and type:
+
+ ```bash
+ conda env create -n klusta -f environment.yml
+ ```
+
+4. **Done**! Now, to use klusta and the phy KwikGUI, enter the directory that contains your files and type:
+
+ ```bash
+ source activate klusta # omit the `source` on Windows
+ klusta yourfile.prm # spikesort your data with a PRM file
+ phy kwik-gui yourfile.kwik # open the GUI
+ ```
+
+ See the documentation for more details.
+
+
+### Updating the software
+
+To get the latest version of the software, open a terminal and type:
+
+```
+source activate klusta # omit the `source` on Windows
+pip install klusta phy phycontrib --upgrade
+```
+
+
+## Technical details
+
+**klusta** is written in pure Python. The clustering code, written in Python and Cython, currently lives in [another repository](https://github.com/kwikteam/klustakwik2/).
+
+
+## Links
+
+* [Documentation](http://klusta.readthedocs.org/en/latest/) (work in progress)
+* [Paper in Nature Neuroscience (April 2016)](http://www.nature.com/neuro/journal/vaop/ncurrent/full/nn.4268.html)
+* [Mailing list](https://groups.google.com/forum/#!forum/klustaviewas)
+* [Sample data repository](http://phy.cortexlab.net/data/) (work in progress)
+
+
+## Credits
+
+**klusta** is developed by [Cyrille Rossant](http://cyrille.rossant.net), [Shabnam Kadir](https://iris.ucl.ac.uk/iris/browse/profile?upi=SKADI56), [Dan Goodman](http://thesamovar.net/), [Max Hunter](https://iris.ucl.ac.uk/iris/browse/profile?upi=MLDHU99), and [Kenneth Harris](https://iris.ucl.ac.uk/iris/browse/profile?upi=KDHAR02), in the [Cortexlab](https://www.ucl.ac.uk/cortexlab), University College London.
+
+%prep
+%autosetup -n klusta-3.0.16
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-klusta -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Thu Mar 09 2023 Python_Bot <Python_Bot@openeuler.org> - 3.0.16-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..556c27a
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+592641723844a40719ce7d987deaff74 klusta-3.0.16.tar.gz