automatic import of python-libNeuroML

3 files changed, 422 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
index e69de29..1c9b8dc 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/libNeuroML-0.4.1.tar.gz
diff --git a/python-libNeuroML.spec b/python-libNeuroML.spec
new file mode 100644
index 0000000..71f3669
--- /dev/null
+++ b/python-libNeuroML.spec
@@ -0,0 +1,420 @@
+%global _empty_manifest_terminate_build 0
+Name:		python-libNeuroML
+Version:	0.4.1
+Release:	1
+Summary:	A Python library for working with NeuroML descriptions of neuronal models
+License:	BSD
+URL:		http://libneuroml.readthedocs.org/en/latest/
+Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/25/8e/5fd3bc9ab18d27e11d1db31fe63b55d58fedf26e34454031902d338a7204/libNeuroML-0.4.1.tar.gz
+BuildArch:	noarch
+
+Requires:	python3-lxml
+Requires:	python3-six
+Requires:	python3-cython
+Requires:	python3-numpy
+Requires:	python3-numexpr
+Requires:	python3-tables
+
+%description
+## Introduction
+
+[![GH Build](https://github.com/NeuralEnsemble/libNeuroML/actions/workflows/ci.yml/badge.svg)](https://github.com/NeuralEnsemble/libNeuroML/actions/workflows/ci.yml)
+[![Documentation Status](https://readthedocs.org/projects/libneuroml/badge/?version=latest)](https://libneuroml.readthedocs.io/en/latest/?badge=latest)
+[![PyPI](https://img.shields.io/pypi/v/libNeuroML)](https://pypi.org/project/libNeuroML/)
+[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/libNeuroML)](https://pypi.org/project/libNeuroML/)
+[![GitHub](https://img.shields.io/github/license/NeuralEnsemble/libNeuroML)](https://github.com/NeuralEnsemble/libNeuroML/blob/master/LICENSE)
+[![GitHub pull requests](https://img.shields.io/github/issues-pr/NeuralEnsemble/libNeuroML)](https://github.com/NeuralEnsemble/libNeuroML/pulls)
+[![GitHub issues](https://img.shields.io/github/issues/NeuralEnsemble/libNeuroML)](https://github.com/NeuralEnsemble/libNeuroML/issues)
+[![GitHub Org's stars](https://img.shields.io/github/stars/NeuralEnsemble?style=social)](https://github.com/NeuralEnsemble)
+[![Twitter Follow](https://img.shields.io/twitter/follow/NeuroML?style=social)](https://twitter.com/NeuroML)
+[![Gitter](https://badges.gitter.im/NeuroML/community.svg)](https://gitter.im/NeuroML/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge)
+
+This package provides Python libNeuroML, for working with neuronal models specified in [NeuroML 2](http://neuroml.org/neuromlv2).
+
+For more about libNeuroML see:
+
+Michael Vella, Robert C. Cannon, Sharon Crook, Andrew P. Davison, Gautham Ganapathy, Hugh P. C. Robinson, R. Angus Silver and Padraig Gleeson,
+**libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience**
+[Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00038/abstract), doi: 10.3389/fninf.2014.00038
+
+_**PLEASE CITE THE PAPER ABOVE IF YOU USE libNeuroML!**_
+
+Documentation is available at http://readthedocs.org/docs/libneuroml/en/latest/
+
+For installation instructions, see http://readthedocs.org/docs/libneuroml/en/latest/install.html
+
+For an overview of all NeuroML related libraries/documentation/publications see https://docs.neuroml.org
+
+## pyNeuroML
+
+A related package, **[pyNeuroML](https://github.com/NeuroML/pyNeuroML)** builds on this and provides functionality, scripts and modules for reading, writing, **simulating** and analysing NeuroML2/LEMS models.
+
+pyNeuroML builds on: [libNeuroML](https://github.com/NeuralEnsemble/libNeuroML) & [PyLEMS](https://github.com/LEMS/pylems) and wraps functionality from [jNeuroML](https://github.com/NeuroML/jNeuroML).
+
+
+## Development process for libNeuroML
+
+Most of the work happens in the [development branch](https://github.com/NeuralEnsemble/libNeuroML/tree/development).
+That branch is kept up to date with the development branches for [NeuroML 2](https://github.com/NeuroML/NeuroML2/tree/development) and related libraries.
+See https://docs.neuroml.org/ for an overview of the various NeuroML libraries.
+
+## Changelog
+### version 0.2.57 (dev)
+
+- Enable Python 3.10 support
+- Regenerate nml.py with generateDS using Python 3
+- Add generic `add` method to all NeuroML ComponentType classes that allows users to easily construct their NeuroML documents.
+- Improve unit tests
+- DEPRECATION notice: `append_to_element` will be deprecated in future releases, please use the `add` method instead
+
+### version 0.2.56
+
+- Documentation updates for RTD and other minor fixes.
+
+### version 0.2.55
+
+- Patch release with minor changes under the hood.
+- Use PyTest for testing.
+- Enable CI on GitHub Actions
+
+### version 0.2.54
+
+- Using Schema for NeuroML v2.1. Better compatibility with Python 3
+
+### version 0.2.50
+
+- Updated to use the final stable Schema for NeuroML v2.0
+
+### version 0.2.47
+
+- Updated to use the final stable Schema for NeuroML v2beta5
+
+### version 0.2.18
+
+- Updated to use the final stable Schema for NeuroML v2beta4
+- Tested with Python 3
+
+### version 0.2.4
+
+- Updated to use the Schema for NeuroML v2beta4
+
+### version 0.2.2
+
+- Updated to use the Schema for NeuroML v2beta3
+- Ensures numpy & pytables are only required when using non-XML loaders/writers
+
+### version 0.2.0
+
+- Updated to use the Schema for NeuroML v2beta2
+
+### version 0.1.9
+
+- Minor release: Update to latest schema
+
+### version 0.1.8
+
+- Several Bug fixes and small enhamcements
+- Support for latest NeuroML schema (see change outline)
+- JSON serialization
+- MongoDB backend
+- HDF5 serialization
+- Improved installation process
+- All usage examples are now run on the Travis-CI continuous integration server to confirm that that they do not error.
+- Schema validation utility
+- Improved documentation and documentation new look
+
+
+:copyright: Copyright 2021 by the libNeuroML team, see [AUTHORS](AUTHORS). Modified BSD License, see [LICENSE](LICENSE) for details.
+
+
+[![Build Status](https://api.travis-ci.org/NeuralEnsemble/libNeuroML.png)](https://travis-ci.org/NeuralEnsemble/libNeuroML)
+
+
+
+
+%package -n python3-libNeuroML
+Summary:	A Python library for working with NeuroML descriptions of neuronal models
+Provides:	python-libNeuroML
+BuildRequires:	python3-devel
+BuildRequires:	python3-setuptools
+BuildRequires:	python3-pip
+%description -n python3-libNeuroML
+## Introduction
+
+[![GH Build](https://github.com/NeuralEnsemble/libNeuroML/actions/workflows/ci.yml/badge.svg)](https://github.com/NeuralEnsemble/libNeuroML/actions/workflows/ci.yml)
+[![Documentation Status](https://readthedocs.org/projects/libneuroml/badge/?version=latest)](https://libneuroml.readthedocs.io/en/latest/?badge=latest)
+[![PyPI](https://img.shields.io/pypi/v/libNeuroML)](https://pypi.org/project/libNeuroML/)
+[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/libNeuroML)](https://pypi.org/project/libNeuroML/)
+[![GitHub](https://img.shields.io/github/license/NeuralEnsemble/libNeuroML)](https://github.com/NeuralEnsemble/libNeuroML/blob/master/LICENSE)
+[![GitHub pull requests](https://img.shields.io/github/issues-pr/NeuralEnsemble/libNeuroML)](https://github.com/NeuralEnsemble/libNeuroML/pulls)
+[![GitHub issues](https://img.shields.io/github/issues/NeuralEnsemble/libNeuroML)](https://github.com/NeuralEnsemble/libNeuroML/issues)
+[![GitHub Org's stars](https://img.shields.io/github/stars/NeuralEnsemble?style=social)](https://github.com/NeuralEnsemble)
+[![Twitter Follow](https://img.shields.io/twitter/follow/NeuroML?style=social)](https://twitter.com/NeuroML)
+[![Gitter](https://badges.gitter.im/NeuroML/community.svg)](https://gitter.im/NeuroML/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge)
+
+This package provides Python libNeuroML, for working with neuronal models specified in [NeuroML 2](http://neuroml.org/neuromlv2).
+
+For more about libNeuroML see:
+
+Michael Vella, Robert C. Cannon, Sharon Crook, Andrew P. Davison, Gautham Ganapathy, Hugh P. C. Robinson, R. Angus Silver and Padraig Gleeson,
+**libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience**
+[Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00038/abstract), doi: 10.3389/fninf.2014.00038
+
+_**PLEASE CITE THE PAPER ABOVE IF YOU USE libNeuroML!**_
+
+Documentation is available at http://readthedocs.org/docs/libneuroml/en/latest/
+
+For installation instructions, see http://readthedocs.org/docs/libneuroml/en/latest/install.html
+
+For an overview of all NeuroML related libraries/documentation/publications see https://docs.neuroml.org
+
+## pyNeuroML
+
+A related package, **[pyNeuroML](https://github.com/NeuroML/pyNeuroML)** builds on this and provides functionality, scripts and modules for reading, writing, **simulating** and analysing NeuroML2/LEMS models.
+
+pyNeuroML builds on: [libNeuroML](https://github.com/NeuralEnsemble/libNeuroML) & [PyLEMS](https://github.com/LEMS/pylems) and wraps functionality from [jNeuroML](https://github.com/NeuroML/jNeuroML).
+
+
+## Development process for libNeuroML
+
+Most of the work happens in the [development branch](https://github.com/NeuralEnsemble/libNeuroML/tree/development).
+That branch is kept up to date with the development branches for [NeuroML 2](https://github.com/NeuroML/NeuroML2/tree/development) and related libraries.
+See https://docs.neuroml.org/ for an overview of the various NeuroML libraries.
+
+## Changelog
+### version 0.2.57 (dev)
+
+- Enable Python 3.10 support
+- Regenerate nml.py with generateDS using Python 3
+- Add generic `add` method to all NeuroML ComponentType classes that allows users to easily construct their NeuroML documents.
+- Improve unit tests
+- DEPRECATION notice: `append_to_element` will be deprecated in future releases, please use the `add` method instead
+
+### version 0.2.56
+
+- Documentation updates for RTD and other minor fixes.
+
+### version 0.2.55
+
+- Patch release with minor changes under the hood.
+- Use PyTest for testing.
+- Enable CI on GitHub Actions
+
+### version 0.2.54
+
+- Using Schema for NeuroML v2.1. Better compatibility with Python 3
+
+### version 0.2.50
+
+- Updated to use the final stable Schema for NeuroML v2.0
+
+### version 0.2.47
+
+- Updated to use the final stable Schema for NeuroML v2beta5
+
+### version 0.2.18
+
+- Updated to use the final stable Schema for NeuroML v2beta4
+- Tested with Python 3
+
+### version 0.2.4
+
+- Updated to use the Schema for NeuroML v2beta4
+
+### version 0.2.2
+
+- Updated to use the Schema for NeuroML v2beta3
+- Ensures numpy & pytables are only required when using non-XML loaders/writers
+
+### version 0.2.0
+
+- Updated to use the Schema for NeuroML v2beta2
+
+### version 0.1.9
+
+- Minor release: Update to latest schema
+
+### version 0.1.8
+
+- Several Bug fixes and small enhamcements
+- Support for latest NeuroML schema (see change outline)
+- JSON serialization
+- MongoDB backend
+- HDF5 serialization
+- Improved installation process
+- All usage examples are now run on the Travis-CI continuous integration server to confirm that that they do not error.
+- Schema validation utility
+- Improved documentation and documentation new look
+
+
+:copyright: Copyright 2021 by the libNeuroML team, see [AUTHORS](AUTHORS). Modified BSD License, see [LICENSE](LICENSE) for details.
+
+
+[![Build Status](https://api.travis-ci.org/NeuralEnsemble/libNeuroML.png)](https://travis-ci.org/NeuralEnsemble/libNeuroML)
+
+
+
+
+%package help
+Summary:	Development documents and examples for libNeuroML
+Provides:	python3-libNeuroML-doc
+%description help
+## Introduction
+
+[![GH Build](https://github.com/NeuralEnsemble/libNeuroML/actions/workflows/ci.yml/badge.svg)](https://github.com/NeuralEnsemble/libNeuroML/actions/workflows/ci.yml)
+[![Documentation Status](https://readthedocs.org/projects/libneuroml/badge/?version=latest)](https://libneuroml.readthedocs.io/en/latest/?badge=latest)
+[![PyPI](https://img.shields.io/pypi/v/libNeuroML)](https://pypi.org/project/libNeuroML/)
+[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/libNeuroML)](https://pypi.org/project/libNeuroML/)
+[![GitHub](https://img.shields.io/github/license/NeuralEnsemble/libNeuroML)](https://github.com/NeuralEnsemble/libNeuroML/blob/master/LICENSE)
+[![GitHub pull requests](https://img.shields.io/github/issues-pr/NeuralEnsemble/libNeuroML)](https://github.com/NeuralEnsemble/libNeuroML/pulls)
+[![GitHub issues](https://img.shields.io/github/issues/NeuralEnsemble/libNeuroML)](https://github.com/NeuralEnsemble/libNeuroML/issues)
+[![GitHub Org's stars](https://img.shields.io/github/stars/NeuralEnsemble?style=social)](https://github.com/NeuralEnsemble)
+[![Twitter Follow](https://img.shields.io/twitter/follow/NeuroML?style=social)](https://twitter.com/NeuroML)
+[![Gitter](https://badges.gitter.im/NeuroML/community.svg)](https://gitter.im/NeuroML/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge)
+
+This package provides Python libNeuroML, for working with neuronal models specified in [NeuroML 2](http://neuroml.org/neuromlv2).
+
+For more about libNeuroML see:
+
+Michael Vella, Robert C. Cannon, Sharon Crook, Andrew P. Davison, Gautham Ganapathy, Hugh P. C. Robinson, R. Angus Silver and Padraig Gleeson,
+**libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience**
+[Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00038/abstract), doi: 10.3389/fninf.2014.00038
+
+_**PLEASE CITE THE PAPER ABOVE IF YOU USE libNeuroML!**_
+
+Documentation is available at http://readthedocs.org/docs/libneuroml/en/latest/
+
+For installation instructions, see http://readthedocs.org/docs/libneuroml/en/latest/install.html
+
+For an overview of all NeuroML related libraries/documentation/publications see https://docs.neuroml.org
+
+## pyNeuroML
+
+A related package, **[pyNeuroML](https://github.com/NeuroML/pyNeuroML)** builds on this and provides functionality, scripts and modules for reading, writing, **simulating** and analysing NeuroML2/LEMS models.
+
+pyNeuroML builds on: [libNeuroML](https://github.com/NeuralEnsemble/libNeuroML) & [PyLEMS](https://github.com/LEMS/pylems) and wraps functionality from [jNeuroML](https://github.com/NeuroML/jNeuroML).
+
+
+## Development process for libNeuroML
+
+Most of the work happens in the [development branch](https://github.com/NeuralEnsemble/libNeuroML/tree/development).
+That branch is kept up to date with the development branches for [NeuroML 2](https://github.com/NeuroML/NeuroML2/tree/development) and related libraries.
+See https://docs.neuroml.org/ for an overview of the various NeuroML libraries.
+
+## Changelog
+### version 0.2.57 (dev)
+
+- Enable Python 3.10 support
+- Regenerate nml.py with generateDS using Python 3
+- Add generic `add` method to all NeuroML ComponentType classes that allows users to easily construct their NeuroML documents.
+- Improve unit tests
+- DEPRECATION notice: `append_to_element` will be deprecated in future releases, please use the `add` method instead
+
+### version 0.2.56
+
+- Documentation updates for RTD and other minor fixes.
+
+### version 0.2.55
+
+- Patch release with minor changes under the hood.
+- Use PyTest for testing.
+- Enable CI on GitHub Actions
+
+### version 0.2.54
+
+- Using Schema for NeuroML v2.1. Better compatibility with Python 3
+
+### version 0.2.50
+
+- Updated to use the final stable Schema for NeuroML v2.0
+
+### version 0.2.47
+
+- Updated to use the final stable Schema for NeuroML v2beta5
+
+### version 0.2.18
+
+- Updated to use the final stable Schema for NeuroML v2beta4
+- Tested with Python 3
+
+### version 0.2.4
+
+- Updated to use the Schema for NeuroML v2beta4
+
+### version 0.2.2
+
+- Updated to use the Schema for NeuroML v2beta3
+- Ensures numpy & pytables are only required when using non-XML loaders/writers
+
+### version 0.2.0
+
+- Updated to use the Schema for NeuroML v2beta2
+
+### version 0.1.9
+
+- Minor release: Update to latest schema
+
+### version 0.1.8
+
+- Several Bug fixes and small enhamcements
+- Support for latest NeuroML schema (see change outline)
+- JSON serialization
+- MongoDB backend
+- HDF5 serialization
+- Improved installation process
+- All usage examples are now run on the Travis-CI continuous integration server to confirm that that they do not error.
+- Schema validation utility
+- Improved documentation and documentation new look
+
+
+:copyright: Copyright 2021 by the libNeuroML team, see [AUTHORS](AUTHORS). Modified BSD License, see [LICENSE](LICENSE) for details.
+
+
+[![Build Status](https://api.travis-ci.org/NeuralEnsemble/libNeuroML.png)](https://travis-ci.org/NeuralEnsemble/libNeuroML)
+
+
+
+
+%prep
+%autosetup -n libNeuroML-0.4.1
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-libNeuroML -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Thu Mar 09 2023 Python_Bot <Python_Bot@openeuler.org> - 0.4.1-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..eb68ae3
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+31d13c6f6713f8163477c37f4e853d5e  libNeuroML-0.4.1.tar.gz