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|
%global _empty_manifest_terminate_build 0
Name: python-limix
Version: 3.0.4
Release: 1
Summary: Genetic analysis toolbox using mixed models
License: MIT
URL: https://github.com/limix/limix
Source0: https://mirrors.aliyun.com/pypi/web/packages/d6/68/f878f7879c772016ebea618255a781408d057aec0f06673f7a8e5909344c/limix-3.0.4.tar.gz
BuildArch: noarch
%description
# limix
[](https://travis-ci.com/limix/limix) [](https://ci.appveyor.com/project/Horta/limix) [](https://limix.readthedocs.io/) [](https://forum.limix.io/)
Genomic analyses require flexible models that can be adapted to the needs of the user.
Limix is a flexible and efficient linear mixed model library with interfaces to Python.
It includes methods for
- Single-variant association and interaction testing
- Variance decompostion analysis with linear mixed models
- Association and interaction set tests
- Different utils for statistical analysis, basic i/o, and plotting.
We have an extensive [documentation](https://limix.readthedocs.io) of the library.
If you need further help or want to discuss anything related to limix, please, join our [forum](https://forum.limix.io/) 💬 and have a chat with us 😃.
In case you have found a bug, please, report it creating an [issue](https://github.com/limix/limix/issues/new).
## Install
> **NOTE**: We will be maintaining limix 2.0.x for a while, in case you find some
> missing feature in limix 3.0.x. If that is the case, please, type `pip install "limix <3,>=2"` in your terminal.
Installation is easy and works on macOS, Linux, and Windows:
```bash
pip install limix
```
If you already have Limix but want to upgrade it to the latest version:
```bash
pip install limix --upgrade
```
## Interactive tutorials
- [eQTL](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=eQTL.ipynb) (requires limix 2.0.x)
- [Struct-LMM](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=struct-lmm.ipynb) (requires limix 2.0.x)
## Running tests
After installation, you can test it
```bash
python -c "import limix; limix.test()"
```
as long as you have [pytest](https://docs.pytest.org/en/latest/).
## Authors
* [Christoph Lippert](https://github.com/clippert)
* [Danilo Horta](https://github.com/horta)
* [Francesco Paolo Casale](https://github.com/fpcasale)
* [Oliver Stegle](https://github.com/ostegle)
## License
This project is licensed under the [Apache License License](https://raw.githubusercontent.com/limix/limix/2.0.0/LICENSE.md).
%package -n python3-limix
Summary: Genetic analysis toolbox using mixed models
Provides: python-limix
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-limix
# limix
[](https://travis-ci.com/limix/limix) [](https://ci.appveyor.com/project/Horta/limix) [](https://limix.readthedocs.io/) [](https://forum.limix.io/)
Genomic analyses require flexible models that can be adapted to the needs of the user.
Limix is a flexible and efficient linear mixed model library with interfaces to Python.
It includes methods for
- Single-variant association and interaction testing
- Variance decompostion analysis with linear mixed models
- Association and interaction set tests
- Different utils for statistical analysis, basic i/o, and plotting.
We have an extensive [documentation](https://limix.readthedocs.io) of the library.
If you need further help or want to discuss anything related to limix, please, join our [forum](https://forum.limix.io/) 💬 and have a chat with us 😃.
In case you have found a bug, please, report it creating an [issue](https://github.com/limix/limix/issues/new).
## Install
> **NOTE**: We will be maintaining limix 2.0.x for a while, in case you find some
> missing feature in limix 3.0.x. If that is the case, please, type `pip install "limix <3,>=2"` in your terminal.
Installation is easy and works on macOS, Linux, and Windows:
```bash
pip install limix
```
If you already have Limix but want to upgrade it to the latest version:
```bash
pip install limix --upgrade
```
## Interactive tutorials
- [eQTL](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=eQTL.ipynb) (requires limix 2.0.x)
- [Struct-LMM](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=struct-lmm.ipynb) (requires limix 2.0.x)
## Running tests
After installation, you can test it
```bash
python -c "import limix; limix.test()"
```
as long as you have [pytest](https://docs.pytest.org/en/latest/).
## Authors
* [Christoph Lippert](https://github.com/clippert)
* [Danilo Horta](https://github.com/horta)
* [Francesco Paolo Casale](https://github.com/fpcasale)
* [Oliver Stegle](https://github.com/ostegle)
## License
This project is licensed under the [Apache License License](https://raw.githubusercontent.com/limix/limix/2.0.0/LICENSE.md).
%package help
Summary: Development documents and examples for limix
Provides: python3-limix-doc
%description help
# limix
[](https://travis-ci.com/limix/limix) [](https://ci.appveyor.com/project/Horta/limix) [](https://limix.readthedocs.io/) [](https://forum.limix.io/)
Genomic analyses require flexible models that can be adapted to the needs of the user.
Limix is a flexible and efficient linear mixed model library with interfaces to Python.
It includes methods for
- Single-variant association and interaction testing
- Variance decompostion analysis with linear mixed models
- Association and interaction set tests
- Different utils for statistical analysis, basic i/o, and plotting.
We have an extensive [documentation](https://limix.readthedocs.io) of the library.
If you need further help or want to discuss anything related to limix, please, join our [forum](https://forum.limix.io/) 💬 and have a chat with us 😃.
In case you have found a bug, please, report it creating an [issue](https://github.com/limix/limix/issues/new).
## Install
> **NOTE**: We will be maintaining limix 2.0.x for a while, in case you find some
> missing feature in limix 3.0.x. If that is the case, please, type `pip install "limix <3,>=2"` in your terminal.
Installation is easy and works on macOS, Linux, and Windows:
```bash
pip install limix
```
If you already have Limix but want to upgrade it to the latest version:
```bash
pip install limix --upgrade
```
## Interactive tutorials
- [eQTL](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=eQTL.ipynb) (requires limix 2.0.x)
- [Struct-LMM](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=struct-lmm.ipynb) (requires limix 2.0.x)
## Running tests
After installation, you can test it
```bash
python -c "import limix; limix.test()"
```
as long as you have [pytest](https://docs.pytest.org/en/latest/).
## Authors
* [Christoph Lippert](https://github.com/clippert)
* [Danilo Horta](https://github.com/horta)
* [Francesco Paolo Casale](https://github.com/fpcasale)
* [Oliver Stegle](https://github.com/ostegle)
## License
This project is licensed under the [Apache License License](https://raw.githubusercontent.com/limix/limix/2.0.0/LICENSE.md).
%prep
%autosetup -n limix-3.0.4
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-limix -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Fri Jun 09 2023 Python_Bot <Python_Bot@openeuler.org> - 3.0.4-1
- Package Spec generated
|
