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authorCoprDistGit <infra@openeuler.org>2023-05-05 09:31:08 +0000
committerCoprDistGit <infra@openeuler.org>2023-05-05 09:31:08 +0000
commit3a839c6d56c18b71e10eb61ac99f887302eea116 (patch)
tree56686ae85e243c850534cef38129b80fd61ce8e5
parent256e28a03205454b6aadc51447d7b4021a2854d5 (diff)
automatic import of python-msprimeopeneuler20.03
-rw-r--r--.gitignore1
-rw-r--r--python-msprime.spec172
-rw-r--r--sources1
3 files changed, 174 insertions, 0 deletions
diff --git a/.gitignore b/.gitignore
index e69de29..7376b00 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/msprime-1.2.0.tar.gz
diff --git a/python-msprime.spec b/python-msprime.spec
new file mode 100644
index 0000000..69e1e51
--- /dev/null
+++ b/python-msprime.spec
@@ -0,0 +1,172 @@
+%global _empty_manifest_terminate_build 0
+Name: python-msprime
+Version: 1.2.0
+Release: 1
+Summary: Simulate genealogical trees and genomic sequence data using population genetic models
+License: GNU GPLv3+
+URL: https://tskit.dev/msprime
+Source0: https://mirrors.nju.edu.cn/pypi/web/packages/e6/81/8b16831a9e58151da55fd63e13d052ba27ea647022b6555964115a38c6cd/msprime-1.2.0.tar.gz
+BuildArch: noarch
+
+Requires: python3-numpy
+Requires: python3-newick
+Requires: python3-tskit
+Requires: python3-demes
+
+%description
+# msprime <img align="right" width="145" height="90" src="https://raw.githubusercontent.com/tskit-dev/msprime/main/msprime_logo.svg">
+
+ [![CircleCI](https://circleci.com/gh/tskit-dev/msprime.svg?style=svg)](https://circleci.com/gh/tskit-dev/msprime) [![codecov](https://codecov.io/gh/tskit-dev/msprime/branch/main/graph/badge.svg)](https://codecov.io/gh/tskit-dev/msprime) [![PyPI Downloads](https://pepy.tech/badge/msprime)](https://pepy.tech/project/msprime) [![Conda Downloads](https://anaconda.org/conda-forge/msprime/badges/downloads.svg)](https://anaconda.org/conda-forge/msprime) [![Docs Build](https://github.com/tskit-dev/msprime/actions/workflows/docs.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/docs.yml) [![Binary wheels](https://github.com/tskit-dev/msprime/actions/workflows/wheels.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/wheels.yml) [![Tests](https://github.com/tskit-dev/msprime/actions/workflows/tests.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/tests.yml)
+
+
+``msprime`` is a population genetics simulator
+based on [tskit](https://tskit.dev). Msprime can simulate random
+ancestral histories for a sample of individuals
+(consistent with a given demographic model) under a
+range of different models and evolutionary processes. Msprime can
+also simulate mutations on a given ancestral
+history (which can be produced by msprime or other programs
+supporting [tskit](https://tskit.dev)) under
+a variety of genome sequence evolution models.
+
+Please see the [documentation](https://tskit.dev/msprime/docs/latest/) for
+more details, including
+[installation instructions](https://tskit.dev/msprime/docs/latest/installation.html).
+
+
+### Research notice
+Please note that this repository is participating in a study into sustainability
+of open source projects. Data will be gathered about this repository for
+approximately the next 12 months, starting from 2021-06-04.
+
+Data collected will include number of contributors, number of PRs, time taken to
+close/merge these PRs, and issues closed.
+
+For more information, please visit
+[our informational page](https://sustainable-open-science-and-software.github.io/)
+or download our
+[participant information sheet](https://sustainable-open-science-and-software.github.io/assets/PIS_sustainable_software.pdf).
+
+
+%package -n python3-msprime
+Summary: Simulate genealogical trees and genomic sequence data using population genetic models
+Provides: python-msprime
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+%description -n python3-msprime
+# msprime <img align="right" width="145" height="90" src="https://raw.githubusercontent.com/tskit-dev/msprime/main/msprime_logo.svg">
+
+ [![CircleCI](https://circleci.com/gh/tskit-dev/msprime.svg?style=svg)](https://circleci.com/gh/tskit-dev/msprime) [![codecov](https://codecov.io/gh/tskit-dev/msprime/branch/main/graph/badge.svg)](https://codecov.io/gh/tskit-dev/msprime) [![PyPI Downloads](https://pepy.tech/badge/msprime)](https://pepy.tech/project/msprime) [![Conda Downloads](https://anaconda.org/conda-forge/msprime/badges/downloads.svg)](https://anaconda.org/conda-forge/msprime) [![Docs Build](https://github.com/tskit-dev/msprime/actions/workflows/docs.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/docs.yml) [![Binary wheels](https://github.com/tskit-dev/msprime/actions/workflows/wheels.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/wheels.yml) [![Tests](https://github.com/tskit-dev/msprime/actions/workflows/tests.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/tests.yml)
+
+
+``msprime`` is a population genetics simulator
+based on [tskit](https://tskit.dev). Msprime can simulate random
+ancestral histories for a sample of individuals
+(consistent with a given demographic model) under a
+range of different models and evolutionary processes. Msprime can
+also simulate mutations on a given ancestral
+history (which can be produced by msprime or other programs
+supporting [tskit](https://tskit.dev)) under
+a variety of genome sequence evolution models.
+
+Please see the [documentation](https://tskit.dev/msprime/docs/latest/) for
+more details, including
+[installation instructions](https://tskit.dev/msprime/docs/latest/installation.html).
+
+
+### Research notice
+Please note that this repository is participating in a study into sustainability
+of open source projects. Data will be gathered about this repository for
+approximately the next 12 months, starting from 2021-06-04.
+
+Data collected will include number of contributors, number of PRs, time taken to
+close/merge these PRs, and issues closed.
+
+For more information, please visit
+[our informational page](https://sustainable-open-science-and-software.github.io/)
+or download our
+[participant information sheet](https://sustainable-open-science-and-software.github.io/assets/PIS_sustainable_software.pdf).
+
+
+%package help
+Summary: Development documents and examples for msprime
+Provides: python3-msprime-doc
+%description help
+# msprime <img align="right" width="145" height="90" src="https://raw.githubusercontent.com/tskit-dev/msprime/main/msprime_logo.svg">
+
+ [![CircleCI](https://circleci.com/gh/tskit-dev/msprime.svg?style=svg)](https://circleci.com/gh/tskit-dev/msprime) [![codecov](https://codecov.io/gh/tskit-dev/msprime/branch/main/graph/badge.svg)](https://codecov.io/gh/tskit-dev/msprime) [![PyPI Downloads](https://pepy.tech/badge/msprime)](https://pepy.tech/project/msprime) [![Conda Downloads](https://anaconda.org/conda-forge/msprime/badges/downloads.svg)](https://anaconda.org/conda-forge/msprime) [![Docs Build](https://github.com/tskit-dev/msprime/actions/workflows/docs.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/docs.yml) [![Binary wheels](https://github.com/tskit-dev/msprime/actions/workflows/wheels.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/wheels.yml) [![Tests](https://github.com/tskit-dev/msprime/actions/workflows/tests.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/tests.yml)
+
+
+``msprime`` is a population genetics simulator
+based on [tskit](https://tskit.dev). Msprime can simulate random
+ancestral histories for a sample of individuals
+(consistent with a given demographic model) under a
+range of different models and evolutionary processes. Msprime can
+also simulate mutations on a given ancestral
+history (which can be produced by msprime or other programs
+supporting [tskit](https://tskit.dev)) under
+a variety of genome sequence evolution models.
+
+Please see the [documentation](https://tskit.dev/msprime/docs/latest/) for
+more details, including
+[installation instructions](https://tskit.dev/msprime/docs/latest/installation.html).
+
+
+### Research notice
+Please note that this repository is participating in a study into sustainability
+of open source projects. Data will be gathered about this repository for
+approximately the next 12 months, starting from 2021-06-04.
+
+Data collected will include number of contributors, number of PRs, time taken to
+close/merge these PRs, and issues closed.
+
+For more information, please visit
+[our informational page](https://sustainable-open-science-and-software.github.io/)
+or download our
+[participant information sheet](https://sustainable-open-science-and-software.github.io/assets/PIS_sustainable_software.pdf).
+
+
+%prep
+%autosetup -n msprime-1.2.0
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-msprime -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 1.2.0-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..46b9eb3
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+a3cba73118b710157ba00217e1c574a0 msprime-1.2.0.tar.gz