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%global _empty_manifest_terminate_build 0
Name: python-nanoplotter
Version: 1.10.0
Release: 1
Summary: Plotting functions of Oxford Nanopore sequencing data
License: MIT
URL: https://github.com/wdecoster/nanoplotter
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/3f/54/d5af6a13c10fa93e0b64efec58ab5a7aba542465bf7a2c383e5a95b86d67/nanoplotter-1.10.0.tar.gz
BuildArch: noarch
%description
# nanoplotter
This module provides functions for plotting data extracted from Oxford Nanopore sequencing reads and alignments, but some of it's functions can also be used for other applications.
[](https://twitter.com/wouter_decoster)
[](https://anaconda.org/bioconda/nanoplotter)
[](https://travis-ci.org/wdecoster/nanoplotter)
## FUNCTIONS
* Check if a specified color is a valid matplotlib color `checkvalidColor(color)`
* Check if a specified output format is valid `checkvalidFormat(format)`
* Create a bivariate plot with dots, hexbins and/or kernel density estimates. Also arguments for specifying axis names, color and xlim/ylim. `scatter(x, y, names, path, color, format, plots, stat=None, log=False, minvalx=0, minvaly=0)`
* Create cumulative yield plot and evaluate read length and quality over time `timePlots(df, path, color, format)`
* Create length distribution histogram and density curve `lengthPlots(array, name, path, n50, color, format, log=False)`
* Create flowcell physical layout in numpy array `makeLayout()`
* Present the activity (number of reads) per channel on the flowcell as a heatmap `spatialHeatmap(array, title, path, color, format)`
## INSTALLATION
```bash
pip install nanoplotter
```
or
[](https://anaconda.org/bioconda/nanoplotter)
```
conda install -c bioconda nanoplotter
```
## CITATION
If you use this tool, please consider citing our [publication](https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939).
%package -n python3-nanoplotter
Summary: Plotting functions of Oxford Nanopore sequencing data
Provides: python-nanoplotter
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-nanoplotter
# nanoplotter
This module provides functions for plotting data extracted from Oxford Nanopore sequencing reads and alignments, but some of it's functions can also be used for other applications.
[](https://twitter.com/wouter_decoster)
[](https://anaconda.org/bioconda/nanoplotter)
[](https://travis-ci.org/wdecoster/nanoplotter)
## FUNCTIONS
* Check if a specified color is a valid matplotlib color `checkvalidColor(color)`
* Check if a specified output format is valid `checkvalidFormat(format)`
* Create a bivariate plot with dots, hexbins and/or kernel density estimates. Also arguments for specifying axis names, color and xlim/ylim. `scatter(x, y, names, path, color, format, plots, stat=None, log=False, minvalx=0, minvaly=0)`
* Create cumulative yield plot and evaluate read length and quality over time `timePlots(df, path, color, format)`
* Create length distribution histogram and density curve `lengthPlots(array, name, path, n50, color, format, log=False)`
* Create flowcell physical layout in numpy array `makeLayout()`
* Present the activity (number of reads) per channel on the flowcell as a heatmap `spatialHeatmap(array, title, path, color, format)`
## INSTALLATION
```bash
pip install nanoplotter
```
or
[](https://anaconda.org/bioconda/nanoplotter)
```
conda install -c bioconda nanoplotter
```
## CITATION
If you use this tool, please consider citing our [publication](https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939).
%package help
Summary: Development documents and examples for nanoplotter
Provides: python3-nanoplotter-doc
%description help
# nanoplotter
This module provides functions for plotting data extracted from Oxford Nanopore sequencing reads and alignments, but some of it's functions can also be used for other applications.
[](https://twitter.com/wouter_decoster)
[](https://anaconda.org/bioconda/nanoplotter)
[](https://travis-ci.org/wdecoster/nanoplotter)
## FUNCTIONS
* Check if a specified color is a valid matplotlib color `checkvalidColor(color)`
* Check if a specified output format is valid `checkvalidFormat(format)`
* Create a bivariate plot with dots, hexbins and/or kernel density estimates. Also arguments for specifying axis names, color and xlim/ylim. `scatter(x, y, names, path, color, format, plots, stat=None, log=False, minvalx=0, minvaly=0)`
* Create cumulative yield plot and evaluate read length and quality over time `timePlots(df, path, color, format)`
* Create length distribution histogram and density curve `lengthPlots(array, name, path, n50, color, format, log=False)`
* Create flowcell physical layout in numpy array `makeLayout()`
* Present the activity (number of reads) per channel on the flowcell as a heatmap `spatialHeatmap(array, title, path, color, format)`
## INSTALLATION
```bash
pip install nanoplotter
```
or
[](https://anaconda.org/bioconda/nanoplotter)
```
conda install -c bioconda nanoplotter
```
## CITATION
If you use this tool, please consider citing our [publication](https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939).
%prep
%autosetup -n nanoplotter-1.10.0
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-nanoplotter -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Wed May 31 2023 Python_Bot <Python_Bot@openeuler.org> - 1.10.0-1
- Package Spec generated
|
