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authorCoprDistGit <infra@openeuler.org>2023-05-05 05:54:58 +0000
committerCoprDistGit <infra@openeuler.org>2023-05-05 05:54:58 +0000
commit9cfb9c1e27a4c24f30325d635ca24d6f703c98ca (patch)
tree2553e8f8c0941cea982fde1b24fee02db8e9c451
parentcb6ff2c69ff71b142eacf5cc887fd652af074ea8 (diff)
automatic import of python-napatrackmateropeneuler20.03
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-rw-r--r--python-napatrackmater.spec311
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+/napatrackmater-3.5.4.tar.gz
diff --git a/python-napatrackmater.spec b/python-napatrackmater.spec
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+%global _empty_manifest_terminate_build 0
+Name: python-napatrackmater
+Version: 3.5.4
+Release: 1
+Summary: Import Trackmate XML files for Track Visualization and analysis in Napari.
+License: MIT License
+URL: https://github.com/kapoorlab/NapaTrackMater/
+Source0: https://mirrors.nju.edu.cn/pypi/web/packages/14/91/848e4bd2bf71766c7a51f45a2c9ad8cff42f9349b27024ec4f37e476df42/napatrackmater-3.5.4.tar.gz
+BuildArch: noarch
+
+Requires: python3-lxml
+Requires: python3-vollseg
+Requires: python3-napari
+Requires: python3-natsort
+Requires: python3-seaborn
+
+%description
+# NapaTrackMater
+Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 3D + time tracks.
+
+This repository is the bridge between the Fiji and Napari world for exporting and viewing the track XML files using [Napari track layer](https://napari.org/tutorials/fundamentals/tracks.html).
+
+[![Build Status](https://travis-ci.com/kapoorlab/napatrackmater.svg?branch=master)](https://travis-ci.com/github/kapoorlab/napatrackmater)
+[![PyPI version](https://img.shields.io/pypi/v/napatrackmater.svg?maxAge=2591000)](https://pypi.org/project/napatrackmater/)
+
+## Installation
+This package can be installed with:
+
+`pip install --user napatrackmater`
+
+If you are building this from the source, clone the repository and install via
+
+```bash
+git clone https://github.com/kapoorlab/NapaTrackMater/
+
+cd NapaTrackMater
+
+pip install --user -e .
+
+# or, to install in editable mode AND grab all of the developer tools
+# (this is required if you want to contribute code back to NapaTrackMater)
+pip install --user -r requirements.txt
+```
+
+### Pipenv install
+
+Pipenv allows you to install dependencies in a virtual environment.
+
+```bash
+# install pipenv if you don't already have it installed
+pip install --user pipenv
+
+# clone the repository and sync the dependencies
+git clone https://github.com/kapoorlab/NapaTrackMater/
+cd NapaTrackMater
+pipenv sync
+
+# make the current package available
+pipenv run python setup.py develop
+
+# you can run the example notebooks by starting the jupyter notebook inside the virtual env
+pipenv run jupyter notebook
+```
+
+
+## Docker
+
+A Docker image can be used to run the code in a container. Once inside the project's directory, build the image with:
+
+~~~bash
+docker build -t kapoorlab/NapaTrackMater .
+~~~
+
+Now to run the `track` command:
+
+~~~bash
+# show help
+docker run --rm -it kapoorlab/NapaTrackMater
+# run it with example data
+docker run --rm -it -v $(pwd)/examples/data:/input kapoorlab/NapaTrackMater track -f /input -r /input/Raw.tif -s /input/Seg.tif -s /input/Mask.tif -n test
+~~~
+
+## Requirements
+
+- Python 3.9 and above.
+
+
+## License
+
+Under MIT license. See [LICENSE](LICENSE).
+
+## Authors
+
+- Varun Kapoor <randomaccessiblekapoor@gmail.com>
+- Mari Tolonen
+
+
+%package -n python3-napatrackmater
+Summary: Import Trackmate XML files for Track Visualization and analysis in Napari.
+Provides: python-napatrackmater
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+%description -n python3-napatrackmater
+# NapaTrackMater
+Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 3D + time tracks.
+
+This repository is the bridge between the Fiji and Napari world for exporting and viewing the track XML files using [Napari track layer](https://napari.org/tutorials/fundamentals/tracks.html).
+
+[![Build Status](https://travis-ci.com/kapoorlab/napatrackmater.svg?branch=master)](https://travis-ci.com/github/kapoorlab/napatrackmater)
+[![PyPI version](https://img.shields.io/pypi/v/napatrackmater.svg?maxAge=2591000)](https://pypi.org/project/napatrackmater/)
+
+## Installation
+This package can be installed with:
+
+`pip install --user napatrackmater`
+
+If you are building this from the source, clone the repository and install via
+
+```bash
+git clone https://github.com/kapoorlab/NapaTrackMater/
+
+cd NapaTrackMater
+
+pip install --user -e .
+
+# or, to install in editable mode AND grab all of the developer tools
+# (this is required if you want to contribute code back to NapaTrackMater)
+pip install --user -r requirements.txt
+```
+
+### Pipenv install
+
+Pipenv allows you to install dependencies in a virtual environment.
+
+```bash
+# install pipenv if you don't already have it installed
+pip install --user pipenv
+
+# clone the repository and sync the dependencies
+git clone https://github.com/kapoorlab/NapaTrackMater/
+cd NapaTrackMater
+pipenv sync
+
+# make the current package available
+pipenv run python setup.py develop
+
+# you can run the example notebooks by starting the jupyter notebook inside the virtual env
+pipenv run jupyter notebook
+```
+
+
+## Docker
+
+A Docker image can be used to run the code in a container. Once inside the project's directory, build the image with:
+
+~~~bash
+docker build -t kapoorlab/NapaTrackMater .
+~~~
+
+Now to run the `track` command:
+
+~~~bash
+# show help
+docker run --rm -it kapoorlab/NapaTrackMater
+# run it with example data
+docker run --rm -it -v $(pwd)/examples/data:/input kapoorlab/NapaTrackMater track -f /input -r /input/Raw.tif -s /input/Seg.tif -s /input/Mask.tif -n test
+~~~
+
+## Requirements
+
+- Python 3.9 and above.
+
+
+## License
+
+Under MIT license. See [LICENSE](LICENSE).
+
+## Authors
+
+- Varun Kapoor <randomaccessiblekapoor@gmail.com>
+- Mari Tolonen
+
+
+%package help
+Summary: Development documents and examples for napatrackmater
+Provides: python3-napatrackmater-doc
+%description help
+# NapaTrackMater
+Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 3D + time tracks.
+
+This repository is the bridge between the Fiji and Napari world for exporting and viewing the track XML files using [Napari track layer](https://napari.org/tutorials/fundamentals/tracks.html).
+
+[![Build Status](https://travis-ci.com/kapoorlab/napatrackmater.svg?branch=master)](https://travis-ci.com/github/kapoorlab/napatrackmater)
+[![PyPI version](https://img.shields.io/pypi/v/napatrackmater.svg?maxAge=2591000)](https://pypi.org/project/napatrackmater/)
+
+## Installation
+This package can be installed with:
+
+`pip install --user napatrackmater`
+
+If you are building this from the source, clone the repository and install via
+
+```bash
+git clone https://github.com/kapoorlab/NapaTrackMater/
+
+cd NapaTrackMater
+
+pip install --user -e .
+
+# or, to install in editable mode AND grab all of the developer tools
+# (this is required if you want to contribute code back to NapaTrackMater)
+pip install --user -r requirements.txt
+```
+
+### Pipenv install
+
+Pipenv allows you to install dependencies in a virtual environment.
+
+```bash
+# install pipenv if you don't already have it installed
+pip install --user pipenv
+
+# clone the repository and sync the dependencies
+git clone https://github.com/kapoorlab/NapaTrackMater/
+cd NapaTrackMater
+pipenv sync
+
+# make the current package available
+pipenv run python setup.py develop
+
+# you can run the example notebooks by starting the jupyter notebook inside the virtual env
+pipenv run jupyter notebook
+```
+
+
+## Docker
+
+A Docker image can be used to run the code in a container. Once inside the project's directory, build the image with:
+
+~~~bash
+docker build -t kapoorlab/NapaTrackMater .
+~~~
+
+Now to run the `track` command:
+
+~~~bash
+# show help
+docker run --rm -it kapoorlab/NapaTrackMater
+# run it with example data
+docker run --rm -it -v $(pwd)/examples/data:/input kapoorlab/NapaTrackMater track -f /input -r /input/Raw.tif -s /input/Seg.tif -s /input/Mask.tif -n test
+~~~
+
+## Requirements
+
+- Python 3.9 and above.
+
+
+## License
+
+Under MIT license. See [LICENSE](LICENSE).
+
+## Authors
+
+- Varun Kapoor <randomaccessiblekapoor@gmail.com>
+- Mari Tolonen
+
+
+%prep
+%autosetup -n napatrackmater-3.5.4
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-napatrackmater -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 3.5.4-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..893acdc
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+2c7d56d0b3e43068abb6c745fa88b14a napatrackmater-3.5.4.tar.gz