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@@ -0,0 +1 @@ +/nextcode_sdk-2.1.1.tar.gz diff --git a/python-nextcode-sdk.spec b/python-nextcode-sdk.spec new file mode 100644 index 0000000..e43abc5 --- /dev/null +++ b/python-nextcode-sdk.spec @@ -0,0 +1,342 @@ +%global _empty_manifest_terminate_build 0 +Name: python-nextcode-sdk +Version: 2.1.1 +Release: 1 +Summary: Python SDK for Genuity Science Services +License: MIT +URL: https://www.github.com/wuxi-nextcode/nextcode-python-sdk +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/35/a3/97047f46f529b8ac6de5d46a4a5b30ad81e5b96a425254c0fca2f0a36b4c/nextcode_sdk-2.1.1.tar.gz +BuildArch: noarch + +Requires: python3-dateutil +Requires: python3-PyYAML +Requires: python3-requests +Requires: python3-hjson +Requires: python3-boto3 +Requires: python3-pandas +Requires: python3-ipython +Requires: python3-termcolor +Requires: python3-tqdm +Requires: python3-ipywidgets +Requires: python3-plotly +Requires: python3-PyJWT + +%description +[](https://badge.fury.io/py/nextcode-sdk) +[](https://travis-ci.org/wuxi-nextcode/nextcode-python-sdk) +[](https://codecov.io/gh/wuxi-nextcode/nextcode-python-sdk/branch/master) +[](https://pypi.org/project/nextcode-sdk/) +[](https://github.com/psf/black) +# nextcode Python SDK + +Nextcode-sdk is a python package for interfacing with Wuxi Nextcode services. + +### Installation +```bash +$ pip install nextcode-sdk -U +``` + +```bash +$ pip install nextcode-sdk[jupyter] -U +``` + +### Getting started + +```python +import nextcode +client = nextcode.Client(api_key="xxx") +qry = client.service("query") +qry.status() +qry.get_queries() +qry.get_query(query_id) +qry.list_templates() + +``` + +### Jupyter notebooks + +To start using the python sdk in Jupyter Notebooks you will first need to install it using the `jupyter` extras and then load the gor `%` magic extension. + +```bash +! pip install nextcode-sdk[jupyter] -U +%load_ext nextcode +``` + +Jupyter notebooks running on the Wuxi Nextcode servers are preconfigured with a `GOR_API_KEY` and `GOR_PROJECT`. If you are running outside such an environment you will need to configure your environment accordingly: +```bash +%env GOR_API_KEY="***" +%env GOR_API_PROJECT="test_project" +# optionally set the LOG_QUERY environment variable to get more information about running queries. +%env LOG_QUERY=1 +``` + +Now you can run gor with the following syntax: +```python +# simple one-liner +%gor gor #dbsnp# | top 100 + +# one-liner which outputs to local variable as a pandas dataframe +results = %gor gor #dbsnp# | top 100 + +# multi-line statement +%%gor +gor #dbsnp# + | top 100 + +# multi-line statement which writes results into project folder +%%gor user_data/results.tsv << +nor #dbsnp# + | top 100 + +# output results to local variable as a pandas dataframe +%%gor myvar << +nor #dbsnp# + | top 100 + +# read from a pandas dataframe in a local variable +%%gor +nor [var:myvar] + | top 100 + +# reference a local variable +num = 10 +%%gor +nor [var:myvar] + | top $num + +``` + + +%package -n python3-nextcode-sdk +Summary: Python SDK for Genuity Science Services +Provides: python-nextcode-sdk +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-nextcode-sdk +[](https://badge.fury.io/py/nextcode-sdk) +[](https://travis-ci.org/wuxi-nextcode/nextcode-python-sdk) +[](https://codecov.io/gh/wuxi-nextcode/nextcode-python-sdk/branch/master) +[](https://pypi.org/project/nextcode-sdk/) +[](https://github.com/psf/black) +# nextcode Python SDK + +Nextcode-sdk is a python package for interfacing with Wuxi Nextcode services. + +### Installation +```bash +$ pip install nextcode-sdk -U +``` + +```bash +$ pip install nextcode-sdk[jupyter] -U +``` + +### Getting started + +```python +import nextcode +client = nextcode.Client(api_key="xxx") +qry = client.service("query") +qry.status() +qry.get_queries() +qry.get_query(query_id) +qry.list_templates() + +``` + +### Jupyter notebooks + +To start using the python sdk in Jupyter Notebooks you will first need to install it using the `jupyter` extras and then load the gor `%` magic extension. + +```bash +! pip install nextcode-sdk[jupyter] -U +%load_ext nextcode +``` + +Jupyter notebooks running on the Wuxi Nextcode servers are preconfigured with a `GOR_API_KEY` and `GOR_PROJECT`. If you are running outside such an environment you will need to configure your environment accordingly: +```bash +%env GOR_API_KEY="***" +%env GOR_API_PROJECT="test_project" +# optionally set the LOG_QUERY environment variable to get more information about running queries. +%env LOG_QUERY=1 +``` + +Now you can run gor with the following syntax: +```python +# simple one-liner +%gor gor #dbsnp# | top 100 + +# one-liner which outputs to local variable as a pandas dataframe +results = %gor gor #dbsnp# | top 100 + +# multi-line statement +%%gor +gor #dbsnp# + | top 100 + +# multi-line statement which writes results into project folder +%%gor user_data/results.tsv << +nor #dbsnp# + | top 100 + +# output results to local variable as a pandas dataframe +%%gor myvar << +nor #dbsnp# + | top 100 + +# read from a pandas dataframe in a local variable +%%gor +nor [var:myvar] + | top 100 + +# reference a local variable +num = 10 +%%gor +nor [var:myvar] + | top $num + +``` + + +%package help +Summary: Development documents and examples for nextcode-sdk +Provides: python3-nextcode-sdk-doc +%description help +[](https://badge.fury.io/py/nextcode-sdk) +[](https://travis-ci.org/wuxi-nextcode/nextcode-python-sdk) +[](https://codecov.io/gh/wuxi-nextcode/nextcode-python-sdk/branch/master) +[](https://pypi.org/project/nextcode-sdk/) +[](https://github.com/psf/black) +# nextcode Python SDK + +Nextcode-sdk is a python package for interfacing with Wuxi Nextcode services. + +### Installation +```bash +$ pip install nextcode-sdk -U +``` + +```bash +$ pip install nextcode-sdk[jupyter] -U +``` + +### Getting started + +```python +import nextcode +client = nextcode.Client(api_key="xxx") +qry = client.service("query") +qry.status() +qry.get_queries() +qry.get_query(query_id) +qry.list_templates() + +``` + +### Jupyter notebooks + +To start using the python sdk in Jupyter Notebooks you will first need to install it using the `jupyter` extras and then load the gor `%` magic extension. + +```bash +! pip install nextcode-sdk[jupyter] -U +%load_ext nextcode +``` + +Jupyter notebooks running on the Wuxi Nextcode servers are preconfigured with a `GOR_API_KEY` and `GOR_PROJECT`. If you are running outside such an environment you will need to configure your environment accordingly: +```bash +%env GOR_API_KEY="***" +%env GOR_API_PROJECT="test_project" +# optionally set the LOG_QUERY environment variable to get more information about running queries. +%env LOG_QUERY=1 +``` + +Now you can run gor with the following syntax: +```python +# simple one-liner +%gor gor #dbsnp# | top 100 + +# one-liner which outputs to local variable as a pandas dataframe +results = %gor gor #dbsnp# | top 100 + +# multi-line statement +%%gor +gor #dbsnp# + | top 100 + +# multi-line statement which writes results into project folder +%%gor user_data/results.tsv << +nor #dbsnp# + | top 100 + +# output results to local variable as a pandas dataframe +%%gor myvar << +nor #dbsnp# + | top 100 + +# read from a pandas dataframe in a local variable +%%gor +nor [var:myvar] + | top 100 + +# reference a local variable +num = 10 +%%gor +nor [var:myvar] + | top $num + +``` + + +%prep +%autosetup -n nextcode-sdk-2.1.1 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-nextcode-sdk -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Wed May 10 2023 Python_Bot <Python_Bot@openeuler.org> - 2.1.1-1 +- Package Spec generated @@ -0,0 +1 @@ +e86ecf4a456e2abeaa2f2d9c5618f9e4 nextcode_sdk-2.1.1.tar.gz |