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|
%global _empty_manifest_terminate_build 0
Name: python-nextcode-sdk
Version: 2.1.1
Release: 1
Summary: Python SDK for Genuity Science Services
License: MIT
URL: https://www.github.com/wuxi-nextcode/nextcode-python-sdk
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/35/a3/97047f46f529b8ac6de5d46a4a5b30ad81e5b96a425254c0fca2f0a36b4c/nextcode_sdk-2.1.1.tar.gz
BuildArch: noarch
Requires: python3-dateutil
Requires: python3-PyYAML
Requires: python3-requests
Requires: python3-hjson
Requires: python3-boto3
Requires: python3-pandas
Requires: python3-ipython
Requires: python3-termcolor
Requires: python3-tqdm
Requires: python3-ipywidgets
Requires: python3-plotly
Requires: python3-PyJWT
%description
[](https://badge.fury.io/py/nextcode-sdk)
[](https://travis-ci.org/wuxi-nextcode/nextcode-python-sdk)
[](https://codecov.io/gh/wuxi-nextcode/nextcode-python-sdk/branch/master)
[](https://pypi.org/project/nextcode-sdk/)
[](https://github.com/psf/black)
# nextcode Python SDK
Nextcode-sdk is a python package for interfacing with Wuxi Nextcode services.
### Installation
```bash
$ pip install nextcode-sdk -U
```
```bash
$ pip install nextcode-sdk[jupyter] -U
```
### Getting started
```python
import nextcode
client = nextcode.Client(api_key="xxx")
qry = client.service("query")
qry.status()
qry.get_queries()
qry.get_query(query_id)
qry.list_templates()
```
### Jupyter notebooks
To start using the python sdk in Jupyter Notebooks you will first need to install it using the `jupyter` extras and then load the gor `%` magic extension.
```bash
! pip install nextcode-sdk[jupyter] -U
%load_ext nextcode
```
Jupyter notebooks running on the Wuxi Nextcode servers are preconfigured with a `GOR_API_KEY` and `GOR_PROJECT`. If you are running outside such an environment you will need to configure your environment accordingly:
```bash
%env GOR_API_KEY="***"
%env GOR_API_PROJECT="test_project"
# optionally set the LOG_QUERY environment variable to get more information about running queries.
%env LOG_QUERY=1
```
Now you can run gor with the following syntax:
```python
# simple one-liner
%gor gor #dbsnp# | top 100
# one-liner which outputs to local variable as a pandas dataframe
results = %gor gor #dbsnp# | top 100
# multi-line statement
%%gor
gor #dbsnp#
| top 100
# multi-line statement which writes results into project folder
%%gor user_data/results.tsv <<
nor #dbsnp#
| top 100
# output results to local variable as a pandas dataframe
%%gor myvar <<
nor #dbsnp#
| top 100
# read from a pandas dataframe in a local variable
%%gor
nor [var:myvar]
| top 100
# reference a local variable
num = 10
%%gor
nor [var:myvar]
| top $num
```
%package -n python3-nextcode-sdk
Summary: Python SDK for Genuity Science Services
Provides: python-nextcode-sdk
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-nextcode-sdk
[](https://badge.fury.io/py/nextcode-sdk)
[](https://travis-ci.org/wuxi-nextcode/nextcode-python-sdk)
[](https://codecov.io/gh/wuxi-nextcode/nextcode-python-sdk/branch/master)
[](https://pypi.org/project/nextcode-sdk/)
[](https://github.com/psf/black)
# nextcode Python SDK
Nextcode-sdk is a python package for interfacing with Wuxi Nextcode services.
### Installation
```bash
$ pip install nextcode-sdk -U
```
```bash
$ pip install nextcode-sdk[jupyter] -U
```
### Getting started
```python
import nextcode
client = nextcode.Client(api_key="xxx")
qry = client.service("query")
qry.status()
qry.get_queries()
qry.get_query(query_id)
qry.list_templates()
```
### Jupyter notebooks
To start using the python sdk in Jupyter Notebooks you will first need to install it using the `jupyter` extras and then load the gor `%` magic extension.
```bash
! pip install nextcode-sdk[jupyter] -U
%load_ext nextcode
```
Jupyter notebooks running on the Wuxi Nextcode servers are preconfigured with a `GOR_API_KEY` and `GOR_PROJECT`. If you are running outside such an environment you will need to configure your environment accordingly:
```bash
%env GOR_API_KEY="***"
%env GOR_API_PROJECT="test_project"
# optionally set the LOG_QUERY environment variable to get more information about running queries.
%env LOG_QUERY=1
```
Now you can run gor with the following syntax:
```python
# simple one-liner
%gor gor #dbsnp# | top 100
# one-liner which outputs to local variable as a pandas dataframe
results = %gor gor #dbsnp# | top 100
# multi-line statement
%%gor
gor #dbsnp#
| top 100
# multi-line statement which writes results into project folder
%%gor user_data/results.tsv <<
nor #dbsnp#
| top 100
# output results to local variable as a pandas dataframe
%%gor myvar <<
nor #dbsnp#
| top 100
# read from a pandas dataframe in a local variable
%%gor
nor [var:myvar]
| top 100
# reference a local variable
num = 10
%%gor
nor [var:myvar]
| top $num
```
%package help
Summary: Development documents and examples for nextcode-sdk
Provides: python3-nextcode-sdk-doc
%description help
[](https://badge.fury.io/py/nextcode-sdk)
[](https://travis-ci.org/wuxi-nextcode/nextcode-python-sdk)
[](https://codecov.io/gh/wuxi-nextcode/nextcode-python-sdk/branch/master)
[](https://pypi.org/project/nextcode-sdk/)
[](https://github.com/psf/black)
# nextcode Python SDK
Nextcode-sdk is a python package for interfacing with Wuxi Nextcode services.
### Installation
```bash
$ pip install nextcode-sdk -U
```
```bash
$ pip install nextcode-sdk[jupyter] -U
```
### Getting started
```python
import nextcode
client = nextcode.Client(api_key="xxx")
qry = client.service("query")
qry.status()
qry.get_queries()
qry.get_query(query_id)
qry.list_templates()
```
### Jupyter notebooks
To start using the python sdk in Jupyter Notebooks you will first need to install it using the `jupyter` extras and then load the gor `%` magic extension.
```bash
! pip install nextcode-sdk[jupyter] -U
%load_ext nextcode
```
Jupyter notebooks running on the Wuxi Nextcode servers are preconfigured with a `GOR_API_KEY` and `GOR_PROJECT`. If you are running outside such an environment you will need to configure your environment accordingly:
```bash
%env GOR_API_KEY="***"
%env GOR_API_PROJECT="test_project"
# optionally set the LOG_QUERY environment variable to get more information about running queries.
%env LOG_QUERY=1
```
Now you can run gor with the following syntax:
```python
# simple one-liner
%gor gor #dbsnp# | top 100
# one-liner which outputs to local variable as a pandas dataframe
results = %gor gor #dbsnp# | top 100
# multi-line statement
%%gor
gor #dbsnp#
| top 100
# multi-line statement which writes results into project folder
%%gor user_data/results.tsv <<
nor #dbsnp#
| top 100
# output results to local variable as a pandas dataframe
%%gor myvar <<
nor #dbsnp#
| top 100
# read from a pandas dataframe in a local variable
%%gor
nor [var:myvar]
| top 100
# reference a local variable
num = 10
%%gor
nor [var:myvar]
| top $num
```
%prep
%autosetup -n nextcode-sdk-2.1.1
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-nextcode-sdk -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Wed May 10 2023 Python_Bot <Python_Bot@openeuler.org> - 2.1.1-1
- Package Spec generated
|
