summaryrefslogtreecommitdiff
path: root/python-nextstrain-cli.spec
blob: c63bc91550bb7b59d290534f063fcde8b3f2eb71 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
%global _empty_manifest_terminate_build 0
Name:		python-nextstrain-cli
Version:	6.2.1
Release:	1
Summary:	Nextstrain command-line tool
License:	MIT
URL:		https://docs.nextstrain.org/projects/cli/
Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/02/a5/d1a95638839b0e6543d153e7ef5cbcdc9185ef4b0c3de9ef737277ee288d/nextstrain-cli-6.2.1.tar.gz
BuildArch:	noarch

Requires:	python3-docutils
Requires:	python3-fasteners
Requires:	python3-packaging
Requires:	python3-pyjwt[crypto]
Requires:	python3-pyparsing
Requires:	python3-requests
Requires:	python3-typing-extensions
Requires:	python3-wcmatch
Requires:	python3-wrapt
Requires:	python3-fsspec
Requires:	python3-s3fs[boto3]
Requires:	python3-importlib-resources
Requires:	python3-dataclasses
Requires:	python3-importlib-metadata
Requires:	python3-docutils
Requires:	python3-flake8
Requires:	python3-mypy
Requires:	python3-nextstrain-sphinx-theme
Requires:	python3-pytest-forked
Requires:	python3-recommonmark
Requires:	python3-sphinx
Requires:	python3-sphinx-argparse
Requires:	python3-sphinx-autobuild
Requires:	python3-sphinx-markdown-tables
Requires:	python3-sphinx-rtd-theme
Requires:	python3-types-docutils
Requires:	python3-types-setuptools
Requires:	python3-types-requests
Requires:	python3-pytest
Requires:	python3-types-requests
Requires:	python3-pytest

%description
# Nextstrain CLI

This is the source code repository for a program called `nextstrain`, the
Nextstrain command-line interface (CLI).  It aims to provide a consistent way
to run and visualize pathogen builds and access Nextstrain components like
[Augur][] and [Auspice][] across computing platforms such as [Docker][],
[Conda][], [Singularity][], and [AWS Batch][].

Get started using the Nextstrain CLI by reading the [documentation][], which
includes installation and usage information.

If you'd like to contribute to development, the [development docs][] should
help you get going.  We're glad you'd like to contribute!

If you need help (or just want to say hi!), [open an issue][] or send us an
email to <hello@nextstrain.org>.


[Augur]: https://docs.nextstrain.org/projects/augur/
[Auspice]: https://docs.nextstrain.org/projects/auspice/
[Docker]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#docker
[Conda]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#conda
[Singularity]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#singularity
[AWS Batch]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#aws-batch
[documentation]: https://docs.nextstrain.org/projects/cli/
[development docs]: https://docs.nextstrain.org/projects/cli/page/development/
[open an issue]: https://github.com/nextstrain/cli/issues/new


%package -n python3-nextstrain-cli
Summary:	Nextstrain command-line tool
Provides:	python-nextstrain-cli
BuildRequires:	python3-devel
BuildRequires:	python3-setuptools
BuildRequires:	python3-pip
%description -n python3-nextstrain-cli
# Nextstrain CLI

This is the source code repository for a program called `nextstrain`, the
Nextstrain command-line interface (CLI).  It aims to provide a consistent way
to run and visualize pathogen builds and access Nextstrain components like
[Augur][] and [Auspice][] across computing platforms such as [Docker][],
[Conda][], [Singularity][], and [AWS Batch][].

Get started using the Nextstrain CLI by reading the [documentation][], which
includes installation and usage information.

If you'd like to contribute to development, the [development docs][] should
help you get going.  We're glad you'd like to contribute!

If you need help (or just want to say hi!), [open an issue][] or send us an
email to <hello@nextstrain.org>.


[Augur]: https://docs.nextstrain.org/projects/augur/
[Auspice]: https://docs.nextstrain.org/projects/auspice/
[Docker]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#docker
[Conda]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#conda
[Singularity]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#singularity
[AWS Batch]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#aws-batch
[documentation]: https://docs.nextstrain.org/projects/cli/
[development docs]: https://docs.nextstrain.org/projects/cli/page/development/
[open an issue]: https://github.com/nextstrain/cli/issues/new


%package help
Summary:	Development documents and examples for nextstrain-cli
Provides:	python3-nextstrain-cli-doc
%description help
# Nextstrain CLI

This is the source code repository for a program called `nextstrain`, the
Nextstrain command-line interface (CLI).  It aims to provide a consistent way
to run and visualize pathogen builds and access Nextstrain components like
[Augur][] and [Auspice][] across computing platforms such as [Docker][],
[Conda][], [Singularity][], and [AWS Batch][].

Get started using the Nextstrain CLI by reading the [documentation][], which
includes installation and usage information.

If you'd like to contribute to development, the [development docs][] should
help you get going.  We're glad you'd like to contribute!

If you need help (or just want to say hi!), [open an issue][] or send us an
email to <hello@nextstrain.org>.


[Augur]: https://docs.nextstrain.org/projects/augur/
[Auspice]: https://docs.nextstrain.org/projects/auspice/
[Docker]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#docker
[Conda]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#conda
[Singularity]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#singularity
[AWS Batch]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#aws-batch
[documentation]: https://docs.nextstrain.org/projects/cli/
[development docs]: https://docs.nextstrain.org/projects/cli/page/development/
[open an issue]: https://github.com/nextstrain/cli/issues/new


%prep
%autosetup -n nextstrain-cli-6.2.1

%build
%py3_build

%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .

%files -n python3-nextstrain-cli -f filelist.lst
%dir %{python3_sitelib}/*

%files help -f doclist.lst
%{_docdir}/*

%changelog
* Wed May 10 2023 Python_Bot <Python_Bot@openeuler.org> - 6.2.1-1
- Package Spec generated