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diff --git a/python-nmdc-schema.spec b/python-nmdc-schema.spec new file mode 100644 index 0000000..d7663df --- /dev/null +++ b/python-nmdc-schema.spec @@ -0,0 +1,200 @@ +%global _empty_manifest_terminate_build 0 +Name: python-nmdc-schema +Version: 7.5.0 +Release: 1 +Summary: Schema resources for the National Microbiome Data Collaborative (NMDC) +License: MIT +URL: https://microbiomedata.github.io/nmdc-schema/ +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/e4/d6/ba4e49d15bd09d591e6b1369e148d694afe9b9f98c54a74b1bce446d4a39/nmdc_schema-7.5.0.tar.gz +BuildArch: noarch + +Requires: python3-linkml +Requires: python3-linkml-runtime + +%description +<p align="center"> + <img src="images/nmdc_logo_long.jpeg" width="100" height="40"/> +</p> + +# National Microbiome Data Collaborative Schema + +[](https://github.com/microbiomedata/nmdc-schema/blob/main/LICENSE) +[](https://badge.fury.io/py/nmdc-schema) + +The NMDC is a multi-organizational effort to integrate microbiome data across diverse areas in medicine, agriculture, +bioenergy, and the environment. This integrated platform facilitates comprehensive discovery of and access to +multidisciplinary microbiome data in order to unlock new possibilities with microbiome data science. + +This repository mainly defines a [LinkML](https://github.com/linkml/linkml) schema for managing metadata from +the [National Microbiome Data Collaborative (NMDC)](https://microbiomedata.org/). + +## Repository Contents Overview + +Some products that are maintained, and tasks orchestrated within this repository are: + +- Maintenance of LinkML YAML that specifies the NMDC Schema + - [src/schema/nmdc.yaml](src/schema/nmdc.yaml) + - and various other YAML schemas imported by it, + like [prov.yaml](src/schema/prov.yaml), [annotation.yaml](src/schema/annotation.yaml), etc. all which you can find + in the [src/schema](src/schema/) folder +- Makefile targets for converting the schema from it's native LinkML YAML format to other artifact + like [JSON Schema](project/jsonschema/nmdc.schema.json) +- Build, deployment and distribution of the schema as a PyPI package +- Automatic publishing of refreshed documentation upon change to the schema, + accessible [here](https://microbiomedata.github.io/nmdc-schema/) + +## Background + +The NMDC [Introduction to metadata and ontologies](https://microbiomedata.org/introduction-to-metadata-and-ontologies/) +primer provides some the context for this project. + +## Maintaining the Schema + +**New system requirement: [Mike Farah's GO-based yq](https://github.com/mikefarah/yq)** + +See [MAINTAINERS.md](MAINTAINERS.md) for instructions on maintaining and updating the schema. + + + +%package -n python3-nmdc-schema +Summary: Schema resources for the National Microbiome Data Collaborative (NMDC) +Provides: python-nmdc-schema +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-nmdc-schema +<p align="center"> + <img src="images/nmdc_logo_long.jpeg" width="100" height="40"/> +</p> + +# National Microbiome Data Collaborative Schema + +[](https://github.com/microbiomedata/nmdc-schema/blob/main/LICENSE) +[](https://badge.fury.io/py/nmdc-schema) + +The NMDC is a multi-organizational effort to integrate microbiome data across diverse areas in medicine, agriculture, +bioenergy, and the environment. This integrated platform facilitates comprehensive discovery of and access to +multidisciplinary microbiome data in order to unlock new possibilities with microbiome data science. + +This repository mainly defines a [LinkML](https://github.com/linkml/linkml) schema for managing metadata from +the [National Microbiome Data Collaborative (NMDC)](https://microbiomedata.org/). + +## Repository Contents Overview + +Some products that are maintained, and tasks orchestrated within this repository are: + +- Maintenance of LinkML YAML that specifies the NMDC Schema + - [src/schema/nmdc.yaml](src/schema/nmdc.yaml) + - and various other YAML schemas imported by it, + like [prov.yaml](src/schema/prov.yaml), [annotation.yaml](src/schema/annotation.yaml), etc. all which you can find + in the [src/schema](src/schema/) folder +- Makefile targets for converting the schema from it's native LinkML YAML format to other artifact + like [JSON Schema](project/jsonschema/nmdc.schema.json) +- Build, deployment and distribution of the schema as a PyPI package +- Automatic publishing of refreshed documentation upon change to the schema, + accessible [here](https://microbiomedata.github.io/nmdc-schema/) + +## Background + +The NMDC [Introduction to metadata and ontologies](https://microbiomedata.org/introduction-to-metadata-and-ontologies/) +primer provides some the context for this project. + +## Maintaining the Schema + +**New system requirement: [Mike Farah's GO-based yq](https://github.com/mikefarah/yq)** + +See [MAINTAINERS.md](MAINTAINERS.md) for instructions on maintaining and updating the schema. + + + +%package help +Summary: Development documents and examples for nmdc-schema +Provides: python3-nmdc-schema-doc +%description help +<p align="center"> + <img src="images/nmdc_logo_long.jpeg" width="100" height="40"/> +</p> + +# National Microbiome Data Collaborative Schema + +[](https://github.com/microbiomedata/nmdc-schema/blob/main/LICENSE) +[](https://badge.fury.io/py/nmdc-schema) + +The NMDC is a multi-organizational effort to integrate microbiome data across diverse areas in medicine, agriculture, +bioenergy, and the environment. This integrated platform facilitates comprehensive discovery of and access to +multidisciplinary microbiome data in order to unlock new possibilities with microbiome data science. + +This repository mainly defines a [LinkML](https://github.com/linkml/linkml) schema for managing metadata from +the [National Microbiome Data Collaborative (NMDC)](https://microbiomedata.org/). + +## Repository Contents Overview + +Some products that are maintained, and tasks orchestrated within this repository are: + +- Maintenance of LinkML YAML that specifies the NMDC Schema + - [src/schema/nmdc.yaml](src/schema/nmdc.yaml) + - and various other YAML schemas imported by it, + like [prov.yaml](src/schema/prov.yaml), [annotation.yaml](src/schema/annotation.yaml), etc. all which you can find + in the [src/schema](src/schema/) folder +- Makefile targets for converting the schema from it's native LinkML YAML format to other artifact + like [JSON Schema](project/jsonschema/nmdc.schema.json) +- Build, deployment and distribution of the schema as a PyPI package +- Automatic publishing of refreshed documentation upon change to the schema, + accessible [here](https://microbiomedata.github.io/nmdc-schema/) + +## Background + +The NMDC [Introduction to metadata and ontologies](https://microbiomedata.org/introduction-to-metadata-and-ontologies/) +primer provides some the context for this project. + +## Maintaining the Schema + +**New system requirement: [Mike Farah's GO-based yq](https://github.com/mikefarah/yq)** + +See [MAINTAINERS.md](MAINTAINERS.md) for instructions on maintaining and updating the schema. + + + +%prep +%autosetup -n nmdc-schema-7.5.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-nmdc-schema -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Mon May 15 2023 Python_Bot <Python_Bot@openeuler.org> - 7.5.0-1 +- Package Spec generated |