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|
%global _empty_manifest_terminate_build 0
Name: python-open-variant
Version: 0.7.6
Release: 1
Summary: OpenVariant provides different functionalities to read, parse and operate different multiple input file formats, being able to customize the output.
License: BSD 3-Clause License
URL: https://github.com/bbglab/openvariant
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/e1/ff/1d23da2e7a9b6985b9fd746edd7a3b3ddea224fabe36793820971e45c12d/open-variant-0.7.6.tar.gz
BuildArch: noarch
Requires: python3-pyyaml
Requires: python3-tqdm
Requires: python3-click
%description
<div align="center">
<br>
<br>
<a href="https://openvariant.readthedocs.io/">
<img src="https://github.com/bbglab/openvariant/raw/master/logo.png" width="590" height="350">
</a>
<br>
<br>
<a href="https://opensource.org/licenses/BSD-3-Clause">
<img alt="License" src="https://img.shields.io/github/license/bbglab/openvariant">
</a>
<a href="https://pypi.org/project/open-variant/">
<img alt="PyPi" src="https://img.shields.io/pypi/v/open-variant">
</a>
<a href="https://github.com/bbglab/openvariant/actions/workflows/openvariant_tester.yml">
<img alt="Test" src="https://github.com/bbglab/openvariant/actions/workflows/openvariant_tester.yml/badge.svg">
</a>
<a href="https://codecov.io/gh/bbglab/openvariant" >
<img alt="Coverage" src="https://codecov.io/gh/bbglab/openvariant/branch/develop/graph/badge.svg?token=N6HUMWS9U5"/>
</a>
<a href="https://openvariant.readthedocs.io/en/latest/?badge=latest">
<img alt="Documentation Status" src="https://readthedocs.org/projects/openvariant/badge/?version=latest">
</a>
<br>
<br>
</div>
OpenVariant is a comprehensive Python package that provides different functionalities to read, parse and operate
different multiple input file formats (e. g. ``tsv``, ``csv``, ``vcf``, ``maf``, ``bed``), being able to customize the output.
Its aim is being able to manage a ton of data represented in multiple ways and be able to build an unified output with
a proper annotation file structure. This package was thought to work with any kind of data that can be represented
as a table.
_Documentation_: [https://openvariant.readthedocs.io](https://openvariant.readthedocs.io)
## Features
OpenVariant offers a toolkit to transform and operate the parsed input data. We will be able to apply different
functionalities on our parsed result some of them are the following ones:
- Find files
- Read and save
- Cat
- Group by
- Count
- Command-line interface (CLI)
- Plugins
<div align="center">
<a href="https://openvariant.readthedocs.io/en/latest/user_guide.html">
<img src="https://github.com/bbglab/openvariant/raw/master/workflow.gif" width="600" height="352">
</a>
</div>
Check [User guide](https://openvariant.readthedocs.io/en/latest/user_guide.html) in OpenVariant's documentation to find all the information about how it works
and how can be applied the different functionalities.
## Installation
It requires Python 3 or higher and can be installed as [PyPI package](https://pypi.org/project/open-variant/) with:
```bash
pip install open-variant
```
For more details check our [Installation](https://openvariant.readthedocs.io/en/latest/installation.html) section.
## Examples
We offer a bunch of [Examples](https://github.com/bbglab/openvariant/tree/master/examples) to we be able to understand how OpenVariant can be applied. Also, check
[Examples](https://openvariant.readthedocs.io/en/latest/examples.html) section in OpenVariant's documentation.
## Contributing
Feel free to contribute as much as you want to the code.
See [CONTRIBUTING](https://github.com/bbglab/openvariant/blob/master/CONTRIBUTING.md) for guidelines on contributing and respect your behaviour specified
at [CODE OF CONDUCT](https://github.com/bbglab/openvariant/blob/master/CODE_OF_CONDUCT.md).
## License
The software is licensed under [BSD-3-Clause](https://github.com/bbglab/openvariant/blob/master/LICENSE).
%package -n python3-open-variant
Summary: OpenVariant provides different functionalities to read, parse and operate different multiple input file formats, being able to customize the output.
Provides: python-open-variant
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-open-variant
<div align="center">
<br>
<br>
<a href="https://openvariant.readthedocs.io/">
<img src="https://github.com/bbglab/openvariant/raw/master/logo.png" width="590" height="350">
</a>
<br>
<br>
<a href="https://opensource.org/licenses/BSD-3-Clause">
<img alt="License" src="https://img.shields.io/github/license/bbglab/openvariant">
</a>
<a href="https://pypi.org/project/open-variant/">
<img alt="PyPi" src="https://img.shields.io/pypi/v/open-variant">
</a>
<a href="https://github.com/bbglab/openvariant/actions/workflows/openvariant_tester.yml">
<img alt="Test" src="https://github.com/bbglab/openvariant/actions/workflows/openvariant_tester.yml/badge.svg">
</a>
<a href="https://codecov.io/gh/bbglab/openvariant" >
<img alt="Coverage" src="https://codecov.io/gh/bbglab/openvariant/branch/develop/graph/badge.svg?token=N6HUMWS9U5"/>
</a>
<a href="https://openvariant.readthedocs.io/en/latest/?badge=latest">
<img alt="Documentation Status" src="https://readthedocs.org/projects/openvariant/badge/?version=latest">
</a>
<br>
<br>
</div>
OpenVariant is a comprehensive Python package that provides different functionalities to read, parse and operate
different multiple input file formats (e. g. ``tsv``, ``csv``, ``vcf``, ``maf``, ``bed``), being able to customize the output.
Its aim is being able to manage a ton of data represented in multiple ways and be able to build an unified output with
a proper annotation file structure. This package was thought to work with any kind of data that can be represented
as a table.
_Documentation_: [https://openvariant.readthedocs.io](https://openvariant.readthedocs.io)
## Features
OpenVariant offers a toolkit to transform and operate the parsed input data. We will be able to apply different
functionalities on our parsed result some of them are the following ones:
- Find files
- Read and save
- Cat
- Group by
- Count
- Command-line interface (CLI)
- Plugins
<div align="center">
<a href="https://openvariant.readthedocs.io/en/latest/user_guide.html">
<img src="https://github.com/bbglab/openvariant/raw/master/workflow.gif" width="600" height="352">
</a>
</div>
Check [User guide](https://openvariant.readthedocs.io/en/latest/user_guide.html) in OpenVariant's documentation to find all the information about how it works
and how can be applied the different functionalities.
## Installation
It requires Python 3 or higher and can be installed as [PyPI package](https://pypi.org/project/open-variant/) with:
```bash
pip install open-variant
```
For more details check our [Installation](https://openvariant.readthedocs.io/en/latest/installation.html) section.
## Examples
We offer a bunch of [Examples](https://github.com/bbglab/openvariant/tree/master/examples) to we be able to understand how OpenVariant can be applied. Also, check
[Examples](https://openvariant.readthedocs.io/en/latest/examples.html) section in OpenVariant's documentation.
## Contributing
Feel free to contribute as much as you want to the code.
See [CONTRIBUTING](https://github.com/bbglab/openvariant/blob/master/CONTRIBUTING.md) for guidelines on contributing and respect your behaviour specified
at [CODE OF CONDUCT](https://github.com/bbglab/openvariant/blob/master/CODE_OF_CONDUCT.md).
## License
The software is licensed under [BSD-3-Clause](https://github.com/bbglab/openvariant/blob/master/LICENSE).
%package help
Summary: Development documents and examples for open-variant
Provides: python3-open-variant-doc
%description help
<div align="center">
<br>
<br>
<a href="https://openvariant.readthedocs.io/">
<img src="https://github.com/bbglab/openvariant/raw/master/logo.png" width="590" height="350">
</a>
<br>
<br>
<a href="https://opensource.org/licenses/BSD-3-Clause">
<img alt="License" src="https://img.shields.io/github/license/bbglab/openvariant">
</a>
<a href="https://pypi.org/project/open-variant/">
<img alt="PyPi" src="https://img.shields.io/pypi/v/open-variant">
</a>
<a href="https://github.com/bbglab/openvariant/actions/workflows/openvariant_tester.yml">
<img alt="Test" src="https://github.com/bbglab/openvariant/actions/workflows/openvariant_tester.yml/badge.svg">
</a>
<a href="https://codecov.io/gh/bbglab/openvariant" >
<img alt="Coverage" src="https://codecov.io/gh/bbglab/openvariant/branch/develop/graph/badge.svg?token=N6HUMWS9U5"/>
</a>
<a href="https://openvariant.readthedocs.io/en/latest/?badge=latest">
<img alt="Documentation Status" src="https://readthedocs.org/projects/openvariant/badge/?version=latest">
</a>
<br>
<br>
</div>
OpenVariant is a comprehensive Python package that provides different functionalities to read, parse and operate
different multiple input file formats (e. g. ``tsv``, ``csv``, ``vcf``, ``maf``, ``bed``), being able to customize the output.
Its aim is being able to manage a ton of data represented in multiple ways and be able to build an unified output with
a proper annotation file structure. This package was thought to work with any kind of data that can be represented
as a table.
_Documentation_: [https://openvariant.readthedocs.io](https://openvariant.readthedocs.io)
## Features
OpenVariant offers a toolkit to transform and operate the parsed input data. We will be able to apply different
functionalities on our parsed result some of them are the following ones:
- Find files
- Read and save
- Cat
- Group by
- Count
- Command-line interface (CLI)
- Plugins
<div align="center">
<a href="https://openvariant.readthedocs.io/en/latest/user_guide.html">
<img src="https://github.com/bbglab/openvariant/raw/master/workflow.gif" width="600" height="352">
</a>
</div>
Check [User guide](https://openvariant.readthedocs.io/en/latest/user_guide.html) in OpenVariant's documentation to find all the information about how it works
and how can be applied the different functionalities.
## Installation
It requires Python 3 or higher and can be installed as [PyPI package](https://pypi.org/project/open-variant/) with:
```bash
pip install open-variant
```
For more details check our [Installation](https://openvariant.readthedocs.io/en/latest/installation.html) section.
## Examples
We offer a bunch of [Examples](https://github.com/bbglab/openvariant/tree/master/examples) to we be able to understand how OpenVariant can be applied. Also, check
[Examples](https://openvariant.readthedocs.io/en/latest/examples.html) section in OpenVariant's documentation.
## Contributing
Feel free to contribute as much as you want to the code.
See [CONTRIBUTING](https://github.com/bbglab/openvariant/blob/master/CONTRIBUTING.md) for guidelines on contributing and respect your behaviour specified
at [CODE OF CONDUCT](https://github.com/bbglab/openvariant/blob/master/CODE_OF_CONDUCT.md).
## License
The software is licensed under [BSD-3-Clause](https://github.com/bbglab/openvariant/blob/master/LICENSE).
%prep
%autosetup -n open-variant-0.7.6
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-open-variant -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 0.7.6-1
- Package Spec generated
|
