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diff --git a/python-patientmatcher.spec b/python-patientmatcher.spec new file mode 100644 index 0000000..2ceb5b5 --- /dev/null +++ b/python-patientmatcher.spec @@ -0,0 +1,133 @@ +%global _empty_manifest_terminate_build 0 +Name: python-patientMatcher +Version: 4.3 +Release: 1 +Summary: A python and MongoDB-based Matchmaker Exchange server +License: MIT +URL: https://github.com/Clinical-Genomics/patientMatcher +Source0: https://mirrors.aliyun.com/pypi/web/packages/4e/e9/89066152d4e630d8489b7e7ffd4b26d0557723b48d1d9b1807562c327c0e/patientMatcher-4.3.tar.gz +BuildArch: noarch + +Requires: python3-coloredlogs +Requires: python3-Flask +Requires: python3-Flask-Mail +Requires: python3-flask-negotiate +Requires: python3-requests +Requires: python3-responses +Requires: python3-jsonschema +Requires: python3-pymongo +Requires: python3-enlighten +Requires: python3-clint + +%description + +# patientMatcher - a Python and MongoDB - based MatchMaker Exchange server +[](https://travis-ci.com/Clinical-Genomics/patientMatcher) [](https://codecov.io/gh/Clinical-Genomics/patientMatcher) +[](https://doi.org/10.1002/humu.24358) + + +PatientMatcher is a **Python** (Flask) and **MongoDB** - based implementation of a [MatchMaker Exchange](https://www.matchmakerexchange.org/) (MME) server, developed and actively maintained by [Clinical Genomics, Science For Life Laboratory in Stockholm](https://www.scilifelab.se/units/clinical-genomics-stockholm/). PatientMatcher is designed as a standalone application, but can easily communicate with external applications via REST API. The MME Stockholm node is being implemented in clinical production in collaboration with the Genomic Medicine Center Karolinska at the Karolinska University Hospital. + +Info on how to test PatientMatcher or to set up a server containing an app frontend and backend is available on the [documentation pages](https://clinical-genomics.github.io/patientMatcher). + + + + +[travis-url]: https://travis-ci.org/Clinical-Genomics/patientMatcher +[travis-image]: https://img.shields.io/travis/Clinical-Genomics/patientMatcher.svg?style=flat-square + + + + +%package -n python3-patientMatcher +Summary: A python and MongoDB-based Matchmaker Exchange server +Provides: python-patientMatcher +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-patientMatcher + +# patientMatcher - a Python and MongoDB - based MatchMaker Exchange server +[](https://travis-ci.com/Clinical-Genomics/patientMatcher) [](https://codecov.io/gh/Clinical-Genomics/patientMatcher) +[](https://doi.org/10.1002/humu.24358) + + +PatientMatcher is a **Python** (Flask) and **MongoDB** - based implementation of a [MatchMaker Exchange](https://www.matchmakerexchange.org/) (MME) server, developed and actively maintained by [Clinical Genomics, Science For Life Laboratory in Stockholm](https://www.scilifelab.se/units/clinical-genomics-stockholm/). PatientMatcher is designed as a standalone application, but can easily communicate with external applications via REST API. The MME Stockholm node is being implemented in clinical production in collaboration with the Genomic Medicine Center Karolinska at the Karolinska University Hospital. + +Info on how to test PatientMatcher or to set up a server containing an app frontend and backend is available on the [documentation pages](https://clinical-genomics.github.io/patientMatcher). + + + + +[travis-url]: https://travis-ci.org/Clinical-Genomics/patientMatcher +[travis-image]: https://img.shields.io/travis/Clinical-Genomics/patientMatcher.svg?style=flat-square + + + + +%package help +Summary: Development documents and examples for patientMatcher +Provides: python3-patientMatcher-doc +%description help + +# patientMatcher - a Python and MongoDB - based MatchMaker Exchange server +[](https://travis-ci.com/Clinical-Genomics/patientMatcher) [](https://codecov.io/gh/Clinical-Genomics/patientMatcher) +[](https://doi.org/10.1002/humu.24358) + + +PatientMatcher is a **Python** (Flask) and **MongoDB** - based implementation of a [MatchMaker Exchange](https://www.matchmakerexchange.org/) (MME) server, developed and actively maintained by [Clinical Genomics, Science For Life Laboratory in Stockholm](https://www.scilifelab.se/units/clinical-genomics-stockholm/). PatientMatcher is designed as a standalone application, but can easily communicate with external applications via REST API. The MME Stockholm node is being implemented in clinical production in collaboration with the Genomic Medicine Center Karolinska at the Karolinska University Hospital. + +Info on how to test PatientMatcher or to set up a server containing an app frontend and backend is available on the [documentation pages](https://clinical-genomics.github.io/patientMatcher). + + + + +[travis-url]: https://travis-ci.org/Clinical-Genomics/patientMatcher +[travis-image]: https://img.shields.io/travis/Clinical-Genomics/patientMatcher.svg?style=flat-square + + + + +%prep +%autosetup -n patientMatcher-4.3 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-patientMatcher -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Tue Jun 20 2023 Python_Bot <Python_Bot@openeuler.org> - 4.3-1 +- Package Spec generated |