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%global _empty_manifest_terminate_build 0
Name: python-READemption
Version: 2.0.3
Release: 1
Summary: A RNA-Seq Analysis Pipeline
License: MIT License
URL: https://pypi.org/project/READemption/
Source0: https://mirrors.aliyun.com/pypi/web/packages/e5/84/1705e6e2e85a47989ea1751dddca5c571e416f5a4fb8eb7d4bd0dd9860b3/READemption-2.0.3.tar.gz
BuildArch: noarch
Requires: python3-biopython
Requires: python3-matplotlib
Requires: python3-pandas
Requires: python3-pysam
Requires: python3-seaborn
Requires: python3-sphinx-argparse
%description
READemption is a pipeline for the computational evaluation of RNA-Seq
data. It was originally developed to process dRNA-Seq reads (as
introduced by Sharma et al., Nature, 2010) originating from bacterial
samples. Meanwhile is has been extended to process data generated in
different experimental setups and from all domains of life. The
functions which are accessible via a command-line interface cover read
processing and aligning, coverage calculation, gene expression
quantification, differential gene expression analysis as well as
visualization. In order to set up and perform analyses quickly
READemption follows the principal of “convention over configuration”:
Once the input files are copied/linked into defined folders no further
parameters have to be given. Still, READemption’s behavior can be
adapted to specific needs of the user by parameters.
%package -n python3-READemption
Summary: A RNA-Seq Analysis Pipeline
Provides: python-READemption
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-READemption
READemption is a pipeline for the computational evaluation of RNA-Seq
data. It was originally developed to process dRNA-Seq reads (as
introduced by Sharma et al., Nature, 2010) originating from bacterial
samples. Meanwhile is has been extended to process data generated in
different experimental setups and from all domains of life. The
functions which are accessible via a command-line interface cover read
processing and aligning, coverage calculation, gene expression
quantification, differential gene expression analysis as well as
visualization. In order to set up and perform analyses quickly
READemption follows the principal of “convention over configuration”:
Once the input files are copied/linked into defined folders no further
parameters have to be given. Still, READemption’s behavior can be
adapted to specific needs of the user by parameters.
%package help
Summary: Development documents and examples for READemption
Provides: python3-READemption-doc
%description help
READemption is a pipeline for the computational evaluation of RNA-Seq
data. It was originally developed to process dRNA-Seq reads (as
introduced by Sharma et al., Nature, 2010) originating from bacterial
samples. Meanwhile is has been extended to process data generated in
different experimental setups and from all domains of life. The
functions which are accessible via a command-line interface cover read
processing and aligning, coverage calculation, gene expression
quantification, differential gene expression analysis as well as
visualization. In order to set up and perform analyses quickly
READemption follows the principal of “convention over configuration”:
Once the input files are copied/linked into defined folders no further
parameters have to be given. Still, READemption’s behavior can be
adapted to specific needs of the user by parameters.
%prep
%autosetup -n READemption-2.0.3
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-READemption -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Fri Jun 09 2023 Python_Bot <Python_Bot@openeuler.org> - 2.0.3-1
- Package Spec generated
|
