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%global _empty_manifest_terminate_build 0
Name: python-smriprep
Version: 0.12.0
Release: 1
Summary: sMRIPrep (Structural MRI PREProcessing) pipeline
License: 3-clause BSD
URL: https://github.com/nipreps/smriprep
Source0: https://mirrors.aliyun.com/pypi/web/packages/99/a0/075b0d648301a57fdbb65fd2c734aff4ea605612f9bda87ce5edb0f27c8f/smriprep-0.12.0.tar.gz
BuildArch: noarch
Requires: python3-indexed-gzip
Requires: python3-lockfile
Requires: python3-looseversion
Requires: python3-matplotlib
Requires: python3-nibabel
Requires: python3-nipype
Requires: python3-niworkflows
Requires: python3-numpy
Requires: python3-packaging
Requires: python3-pybids
Requires: python3-pyyaml
Requires: python3-templateflow
Requires: python3-importlib-resources
Requires: python3-datalad
Requires: python3-nbsphinx
Requires: python3-packaging
Requires: python3-pydot
Requires: python3-sphinx
Requires: python3-sphinx-argparse
Requires: python3-sphinx-rtd-theme
Requires: python3-sphinxcontrib-apidoc
Requires: python3-sphinxcontrib-napoleon
Requires: python3-sphinxcontrib-versioning
Requires: python3-duecredit
Requires: python3-psutil
Requires: python3-coverage
Requires: python3-pytest
Requires: python3-pytest-cov
Requires: python3-pytest-env
Requires: python3-datalad
Requires: python3-nbsphinx
Requires: python3-packaging
Requires: python3-pydot
Requires: python3-sphinx
Requires: python3-sphinx-argparse
Requires: python3-sphinx-rtd-theme
Requires: python3-sphinxcontrib-apidoc
Requires: python3-sphinxcontrib-napoleon
Requires: python3-sphinxcontrib-versioning
Requires: python3-nbsphinx
Requires: python3-packaging
Requires: python3-pydot
Requires: python3-sphinx
Requires: python3-sphinx-argparse
Requires: python3-sphinx-rtd-theme
Requires: python3-sphinxcontrib-apidoc
Requires: python3-sphinxcontrib-napoleon
Requires: python3-sphinxcontrib-versioning
Requires: python3-duecredit
Requires: python3-psutil
Requires: python3-flake8
Requires: python3-coverage
Requires: python3-pytest
Requires: python3-pytest-cov
Requires: python3-pytest-env
Requires: python3-coverage
Requires: python3-pytest
Requires: python3-pytest-cov
Requires: python3-pytest-env
%description
*sMRIPrep* is a structural magnetic resonance imaging (sMRI) data
preprocessing pipeline that is designed to provide an easily accessible,
state-of-the-art interface that is robust to variations in scan acquisition
protocols and that requires minimal user input, while providing easily
interpretable and comprehensive error and output reporting.
It performs basic processing steps (subject-wise averaging, B1 field correction,
spatial normalization, segmentation, skullstripping etc.) providing
outputs that can be easily connected to subsequent tools such as
`fMRIPrep <https://github.com/nipreps/fmriprep>`__ or
`dMRIPrep <https://github.com/nipreps/dmriprep>`__.
The workflow is based on `Nipype <https://nipype.readthedocs.io>`__ and encompases
a combination of tools from well-known software packages, including
`FSL <https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>`__,
`ANTs <https://stnava.github.io/ANTs/>`__,
`FreeSurfer <https://surfer.nmr.mgh.harvard.edu/>`__,
and `AFNI <https://afni.nimh.nih.gov/>`__.
More information and documentation can be found at
https://www.nipreps.org/smriprep/.
Support is provided on `neurostars.org <https://neurostars.org/tags/smriprep>`_.
%package -n python3-smriprep
Summary: sMRIPrep (Structural MRI PREProcessing) pipeline
Provides: python-smriprep
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-smriprep
*sMRIPrep* is a structural magnetic resonance imaging (sMRI) data
preprocessing pipeline that is designed to provide an easily accessible,
state-of-the-art interface that is robust to variations in scan acquisition
protocols and that requires minimal user input, while providing easily
interpretable and comprehensive error and output reporting.
It performs basic processing steps (subject-wise averaging, B1 field correction,
spatial normalization, segmentation, skullstripping etc.) providing
outputs that can be easily connected to subsequent tools such as
`fMRIPrep <https://github.com/nipreps/fmriprep>`__ or
`dMRIPrep <https://github.com/nipreps/dmriprep>`__.
The workflow is based on `Nipype <https://nipype.readthedocs.io>`__ and encompases
a combination of tools from well-known software packages, including
`FSL <https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>`__,
`ANTs <https://stnava.github.io/ANTs/>`__,
`FreeSurfer <https://surfer.nmr.mgh.harvard.edu/>`__,
and `AFNI <https://afni.nimh.nih.gov/>`__.
More information and documentation can be found at
https://www.nipreps.org/smriprep/.
Support is provided on `neurostars.org <https://neurostars.org/tags/smriprep>`_.
%package help
Summary: Development documents and examples for smriprep
Provides: python3-smriprep-doc
%description help
*sMRIPrep* is a structural magnetic resonance imaging (sMRI) data
preprocessing pipeline that is designed to provide an easily accessible,
state-of-the-art interface that is robust to variations in scan acquisition
protocols and that requires minimal user input, while providing easily
interpretable and comprehensive error and output reporting.
It performs basic processing steps (subject-wise averaging, B1 field correction,
spatial normalization, segmentation, skullstripping etc.) providing
outputs that can be easily connected to subsequent tools such as
`fMRIPrep <https://github.com/nipreps/fmriprep>`__ or
`dMRIPrep <https://github.com/nipreps/dmriprep>`__.
The workflow is based on `Nipype <https://nipype.readthedocs.io>`__ and encompases
a combination of tools from well-known software packages, including
`FSL <https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>`__,
`ANTs <https://stnava.github.io/ANTs/>`__,
`FreeSurfer <https://surfer.nmr.mgh.harvard.edu/>`__,
and `AFNI <https://afni.nimh.nih.gov/>`__.
More information and documentation can be found at
https://www.nipreps.org/smriprep/.
Support is provided on `neurostars.org <https://neurostars.org/tags/smriprep>`_.
%prep
%autosetup -n smriprep-0.12.0
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-smriprep -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Thu Jun 08 2023 Python_Bot <Python_Bot@openeuler.org> - 0.12.0-1
- Package Spec generated
|
