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@@ -0,0 +1 @@ +/spyking-circus-1.1.0.tar.gz diff --git a/python-spyking-circus.spec b/python-spyking-circus.spec new file mode 100644 index 0000000..7ae85d2 --- /dev/null +++ b/python-spyking-circus.spec @@ -0,0 +1,124 @@ +%global _empty_manifest_terminate_build 0 +Name: python-spyking-circus +Version: 1.1.0 +Release: 1 +Summary: Fast spike sorting by template matching +License: License :: OSI Approved :: CeCILL-2.1 +URL: http://spyking-circus.rtfd.org +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/a9/cf/c16b5eedf2710972f29c6e561289e5774a010bd65fb89355922358201ab2/spyking-circus-1.1.0.tar.gz +BuildArch: noarch + +Requires: python3-mpi4py +Requires: python3-numpy +Requires: python3-cython +Requires: python3-scipy +Requires: python3-matplotlib +Requires: python3-h5py +Requires: python3-colorama +Requires: python3-psutil +Requires: python3-tqdm +Requires: python3-blosc +Requires: python3-statsmodels +Requires: python3-setuptools +Requires: python3-scikit-learn + +%description +*A fast and scalable solution for spike sorting of large-scale extracellular recordings* +SpyKING CIRCUS is a python code to allow fast spike sorting on multi channel recordings. +A publication on the algorithm can be found at https://elifesciences.org/articles/34518 +It has been tested on datasets coming from *in vitro* retina +with 252 electrodes MEA, from *in vivo* hippocampus with tetrodes, *in vivo* and *in vitro* cortex +data with 30 and up to 4225 channels, with good results. Synthetic tests on these data show +that cells firing at more than 0.5Hz can be detected, and their spikes recovered with error +rates at around 1%, even resolving overlapping spikes and synchronous firing. It seems to +be compatible with optogenetic stimulation, based on experimental data obtained in the retina. +SpyKING CIRCUS is currently still under development. Please do not hesitate to report issues with the issue tracker +* Documentation can be found at http://spyking-circus.rtfd.org +* A Google group can be found at http://groups.google.com/forum/#!forum/spyking-circus-users +* A bug tracker can be found at https://github.com/spyking-circus/spyking-circus/issues +* Open source ground-truth datasets used in the paper https://zenodo.org/record/1205233#.WrTFtXXwaV4 + +%package -n python3-spyking-circus +Summary: Fast spike sorting by template matching +Provides: python-spyking-circus +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-spyking-circus +*A fast and scalable solution for spike sorting of large-scale extracellular recordings* +SpyKING CIRCUS is a python code to allow fast spike sorting on multi channel recordings. +A publication on the algorithm can be found at https://elifesciences.org/articles/34518 +It has been tested on datasets coming from *in vitro* retina +with 252 electrodes MEA, from *in vivo* hippocampus with tetrodes, *in vivo* and *in vitro* cortex +data with 30 and up to 4225 channels, with good results. Synthetic tests on these data show +that cells firing at more than 0.5Hz can be detected, and their spikes recovered with error +rates at around 1%, even resolving overlapping spikes and synchronous firing. It seems to +be compatible with optogenetic stimulation, based on experimental data obtained in the retina. +SpyKING CIRCUS is currently still under development. Please do not hesitate to report issues with the issue tracker +* Documentation can be found at http://spyking-circus.rtfd.org +* A Google group can be found at http://groups.google.com/forum/#!forum/spyking-circus-users +* A bug tracker can be found at https://github.com/spyking-circus/spyking-circus/issues +* Open source ground-truth datasets used in the paper https://zenodo.org/record/1205233#.WrTFtXXwaV4 + +%package help +Summary: Development documents and examples for spyking-circus +Provides: python3-spyking-circus-doc +%description help +*A fast and scalable solution for spike sorting of large-scale extracellular recordings* +SpyKING CIRCUS is a python code to allow fast spike sorting on multi channel recordings. +A publication on the algorithm can be found at https://elifesciences.org/articles/34518 +It has been tested on datasets coming from *in vitro* retina +with 252 electrodes MEA, from *in vivo* hippocampus with tetrodes, *in vivo* and *in vitro* cortex +data with 30 and up to 4225 channels, with good results. Synthetic tests on these data show +that cells firing at more than 0.5Hz can be detected, and their spikes recovered with error +rates at around 1%, even resolving overlapping spikes and synchronous firing. It seems to +be compatible with optogenetic stimulation, based on experimental data obtained in the retina. +SpyKING CIRCUS is currently still under development. Please do not hesitate to report issues with the issue tracker +* Documentation can be found at http://spyking-circus.rtfd.org +* A Google group can be found at http://groups.google.com/forum/#!forum/spyking-circus-users +* A bug tracker can be found at https://github.com/spyking-circus/spyking-circus/issues +* Open source ground-truth datasets used in the paper https://zenodo.org/record/1205233#.WrTFtXXwaV4 + +%prep +%autosetup -n spyking-circus-1.1.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-spyking-circus -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Thu Mar 09 2023 Python_Bot <Python_Bot@openeuler.org> - 1.1.0-1 +- Package Spec generated @@ -0,0 +1 @@ +c937d3079931eade545fbda2c8cac1e2 spyking-circus-1.1.0.tar.gz |