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diff --git a/python-strainge.spec b/python-strainge.spec new file mode 100644 index 0000000..6b256dc --- /dev/null +++ b/python-strainge.spec @@ -0,0 +1,101 @@ +%global _empty_manifest_terminate_build 0 +Name: python-strainge +Version: 1.3.7 +Release: 1 +Summary: Strain Genome Explorer: a tool suite for tracking and characterizing low-abundance strains. +License: BSD License +URL: https://pypi.org/project/strainge/ +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/3e/fd/4fe70e14f214b19ef8b70ad8dc60a9238f8e450f41774b938e197aca68b4/strainge-1.3.7.tar.gz +BuildArch: noarch + +Requires: python3-numpy +Requires: python3-scipy +Requires: python3-h5py +Requires: python3-intervaltree +Requires: python3-matplotlib +Requires: python3-scikit-bio +Requires: python3-scikit-learn +Requires: python3-pysam + +%description +StrainGE is a set of tools to analyse the within-species strain diversity in +bacterial populations. It consists of two main components: 1) StrainGST: Strain +Genome Search tool, a tool to find close reference genomes for strains present +in a sample and 2) StrainGR: Strain Genome Recovery, a tool to perform +strain-aware variant calling at low coverages. +[](https://strainge.readthedocs.io/en/latest/?badge=latest) +[](https://pypi.org/project/strainge) +[](https://zenodo.org/badge/latestdoi/71356920) + +%package -n python3-strainge +Summary: Strain Genome Explorer: a tool suite for tracking and characterizing low-abundance strains. +Provides: python-strainge +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-strainge +StrainGE is a set of tools to analyse the within-species strain diversity in +bacterial populations. It consists of two main components: 1) StrainGST: Strain +Genome Search tool, a tool to find close reference genomes for strains present +in a sample and 2) StrainGR: Strain Genome Recovery, a tool to perform +strain-aware variant calling at low coverages. +[](https://strainge.readthedocs.io/en/latest/?badge=latest) +[](https://pypi.org/project/strainge) +[](https://zenodo.org/badge/latestdoi/71356920) + +%package help +Summary: Development documents and examples for strainge +Provides: python3-strainge-doc +%description help +StrainGE is a set of tools to analyse the within-species strain diversity in +bacterial populations. It consists of two main components: 1) StrainGST: Strain +Genome Search tool, a tool to find close reference genomes for strains present +in a sample and 2) StrainGR: Strain Genome Recovery, a tool to perform +strain-aware variant calling at low coverages. +[](https://strainge.readthedocs.io/en/latest/?badge=latest) +[](https://pypi.org/project/strainge) +[](https://zenodo.org/badge/latestdoi/71356920) + +%prep +%autosetup -n strainge-1.3.7 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-strainge -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Wed May 10 2023 Python_Bot <Python_Bot@openeuler.org> - 1.3.7-1 +- Package Spec generated |