blob: 6b256dc71c938588b48fa156fccaeaa1f7059aeb (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
|
%global _empty_manifest_terminate_build 0
Name: python-strainge
Version: 1.3.7
Release: 1
Summary: Strain Genome Explorer: a tool suite for tracking and characterizing low-abundance strains.
License: BSD License
URL: https://pypi.org/project/strainge/
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/3e/fd/4fe70e14f214b19ef8b70ad8dc60a9238f8e450f41774b938e197aca68b4/strainge-1.3.7.tar.gz
BuildArch: noarch
Requires: python3-numpy
Requires: python3-scipy
Requires: python3-h5py
Requires: python3-intervaltree
Requires: python3-matplotlib
Requires: python3-scikit-bio
Requires: python3-scikit-learn
Requires: python3-pysam
%description
StrainGE is a set of tools to analyse the within-species strain diversity in
bacterial populations. It consists of two main components: 1) StrainGST: Strain
Genome Search tool, a tool to find close reference genomes for strains present
in a sample and 2) StrainGR: Strain Genome Recovery, a tool to perform
strain-aware variant calling at low coverages.
[](https://strainge.readthedocs.io/en/latest/?badge=latest)
[](https://pypi.org/project/strainge)
[](https://zenodo.org/badge/latestdoi/71356920)
%package -n python3-strainge
Summary: Strain Genome Explorer: a tool suite for tracking and characterizing low-abundance strains.
Provides: python-strainge
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-strainge
StrainGE is a set of tools to analyse the within-species strain diversity in
bacterial populations. It consists of two main components: 1) StrainGST: Strain
Genome Search tool, a tool to find close reference genomes for strains present
in a sample and 2) StrainGR: Strain Genome Recovery, a tool to perform
strain-aware variant calling at low coverages.
[](https://strainge.readthedocs.io/en/latest/?badge=latest)
[](https://pypi.org/project/strainge)
[](https://zenodo.org/badge/latestdoi/71356920)
%package help
Summary: Development documents and examples for strainge
Provides: python3-strainge-doc
%description help
StrainGE is a set of tools to analyse the within-species strain diversity in
bacterial populations. It consists of two main components: 1) StrainGST: Strain
Genome Search tool, a tool to find close reference genomes for strains present
in a sample and 2) StrainGR: Strain Genome Recovery, a tool to perform
strain-aware variant calling at low coverages.
[](https://strainge.readthedocs.io/en/latest/?badge=latest)
[](https://pypi.org/project/strainge)
[](https://zenodo.org/badge/latestdoi/71356920)
%prep
%autosetup -n strainge-1.3.7
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-strainge -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Wed May 10 2023 Python_Bot <Python_Bot@openeuler.org> - 1.3.7-1
- Package Spec generated
|
