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authorCoprDistGit <infra@openeuler.org>2023-05-05 12:16:28 +0000
committerCoprDistGit <infra@openeuler.org>2023-05-05 12:16:28 +0000
commitfcf44861e0dba4915fde515c9fc979d302d81006 (patch)
treef27a7156a9992cddae6486ca9a7230af671edadf
parent49190ebaabbef8155bf5044b28da5590f08fd988 (diff)
automatic import of python-striaopeneuler20.03
-rw-r--r--.gitignore1
-rw-r--r--python-stria.spec95
-rw-r--r--sources1
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diff --git a/.gitignore b/.gitignore
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+/stria-0.1.3.tar.gz
diff --git a/python-stria.spec b/python-stria.spec
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index 0000000..58470d6
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+++ b/python-stria.spec
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+%global _empty_manifest_terminate_build 0
+Name: python-stria
+Version: 0.1.3
+Release: 1
+Summary: stria (short tandem repeat identification and analysis) is a python package for finding tandem repeats from DNA sequences
+License: MIT
+URL: https://github.com/lmdu/stria
+Source0: https://mirrors.nju.edu.cn/pypi/web/packages/cb/3c/3558007b857412a36d4bf4a93892860b1901a1753a04266a8b7a8f0f6716/stria-0.1.3.tar.gz
+
+
+%description
+A Tandem repeat (TR) in genomic sequence is a set of adjacent short DNA sequence repeated consecutively.
+The core sequence or repeat unit is generally called motif. According to the motif length, tandem repeats
+can be classified as microsatellites and minisatellites. Microsatellites are also known as simple sequence
+repeats (SSRs) or short tandem repeats (STRs) with motif length of 1-6 bp. Minisatellites are also sometimes
+referred to as variable number of tandem repeats (VNTRs) has longer motif length than micorsatellites.
+The ``stria`` is a lightweight Python C extension for identification and analysis of short tandem repeats.
+The ``stria`` enables to fastly identify both exact and imperfect SSRs and VNTRs from large numbers of DNA sequences.
+The ``stria`` also provides command line tools for users to extract tandem repeats from Fasta files.
+
+%package -n python3-stria
+Summary: stria (short tandem repeat identification and analysis) is a python package for finding tandem repeats from DNA sequences
+Provides: python-stria
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+BuildRequires: python3-cffi
+BuildRequires: gcc
+BuildRequires: gdb
+%description -n python3-stria
+A Tandem repeat (TR) in genomic sequence is a set of adjacent short DNA sequence repeated consecutively.
+The core sequence or repeat unit is generally called motif. According to the motif length, tandem repeats
+can be classified as microsatellites and minisatellites. Microsatellites are also known as simple sequence
+repeats (SSRs) or short tandem repeats (STRs) with motif length of 1-6 bp. Minisatellites are also sometimes
+referred to as variable number of tandem repeats (VNTRs) has longer motif length than micorsatellites.
+The ``stria`` is a lightweight Python C extension for identification and analysis of short tandem repeats.
+The ``stria`` enables to fastly identify both exact and imperfect SSRs and VNTRs from large numbers of DNA sequences.
+The ``stria`` also provides command line tools for users to extract tandem repeats from Fasta files.
+
+%package help
+Summary: Development documents and examples for stria
+Provides: python3-stria-doc
+%description help
+A Tandem repeat (TR) in genomic sequence is a set of adjacent short DNA sequence repeated consecutively.
+The core sequence or repeat unit is generally called motif. According to the motif length, tandem repeats
+can be classified as microsatellites and minisatellites. Microsatellites are also known as simple sequence
+repeats (SSRs) or short tandem repeats (STRs) with motif length of 1-6 bp. Minisatellites are also sometimes
+referred to as variable number of tandem repeats (VNTRs) has longer motif length than micorsatellites.
+The ``stria`` is a lightweight Python C extension for identification and analysis of short tandem repeats.
+The ``stria`` enables to fastly identify both exact and imperfect SSRs and VNTRs from large numbers of DNA sequences.
+The ``stria`` also provides command line tools for users to extract tandem repeats from Fasta files.
+
+%prep
+%autosetup -n stria-0.1.3
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-stria -f filelist.lst
+%dir %{python3_sitearch}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 0.1.3-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..9342410
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+5661a09ea1a201487a7220ba8ae9aa2e stria-0.1.3.tar.gz