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| author | CoprDistGit <infra@openeuler.org> | 2023-05-05 12:16:28 +0000 |
|---|---|---|
| committer | CoprDistGit <infra@openeuler.org> | 2023-05-05 12:16:28 +0000 |
| commit | fcf44861e0dba4915fde515c9fc979d302d81006 (patch) | |
| tree | f27a7156a9992cddae6486ca9a7230af671edadf | |
| parent | 49190ebaabbef8155bf5044b28da5590f08fd988 (diff) | |
automatic import of python-striaopeneuler20.03
| -rw-r--r-- | .gitignore | 1 | ||||
| -rw-r--r-- | python-stria.spec | 95 | ||||
| -rw-r--r-- | sources | 1 |
3 files changed, 97 insertions, 0 deletions
@@ -0,0 +1 @@ +/stria-0.1.3.tar.gz diff --git a/python-stria.spec b/python-stria.spec new file mode 100644 index 0000000..58470d6 --- /dev/null +++ b/python-stria.spec @@ -0,0 +1,95 @@ +%global _empty_manifest_terminate_build 0 +Name: python-stria +Version: 0.1.3 +Release: 1 +Summary: stria (short tandem repeat identification and analysis) is a python package for finding tandem repeats from DNA sequences +License: MIT +URL: https://github.com/lmdu/stria +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/cb/3c/3558007b857412a36d4bf4a93892860b1901a1753a04266a8b7a8f0f6716/stria-0.1.3.tar.gz + + +%description +A Tandem repeat (TR) in genomic sequence is a set of adjacent short DNA sequence repeated consecutively. +The core sequence or repeat unit is generally called motif. According to the motif length, tandem repeats +can be classified as microsatellites and minisatellites. Microsatellites are also known as simple sequence +repeats (SSRs) or short tandem repeats (STRs) with motif length of 1-6 bp. Minisatellites are also sometimes +referred to as variable number of tandem repeats (VNTRs) has longer motif length than micorsatellites. +The ``stria`` is a lightweight Python C extension for identification and analysis of short tandem repeats. +The ``stria`` enables to fastly identify both exact and imperfect SSRs and VNTRs from large numbers of DNA sequences. +The ``stria`` also provides command line tools for users to extract tandem repeats from Fasta files. + +%package -n python3-stria +Summary: stria (short tandem repeat identification and analysis) is a python package for finding tandem repeats from DNA sequences +Provides: python-stria +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +BuildRequires: python3-cffi +BuildRequires: gcc +BuildRequires: gdb +%description -n python3-stria +A Tandem repeat (TR) in genomic sequence is a set of adjacent short DNA sequence repeated consecutively. +The core sequence or repeat unit is generally called motif. According to the motif length, tandem repeats +can be classified as microsatellites and minisatellites. Microsatellites are also known as simple sequence +repeats (SSRs) or short tandem repeats (STRs) with motif length of 1-6 bp. Minisatellites are also sometimes +referred to as variable number of tandem repeats (VNTRs) has longer motif length than micorsatellites. +The ``stria`` is a lightweight Python C extension for identification and analysis of short tandem repeats. +The ``stria`` enables to fastly identify both exact and imperfect SSRs and VNTRs from large numbers of DNA sequences. +The ``stria`` also provides command line tools for users to extract tandem repeats from Fasta files. + +%package help +Summary: Development documents and examples for stria +Provides: python3-stria-doc +%description help +A Tandem repeat (TR) in genomic sequence is a set of adjacent short DNA sequence repeated consecutively. +The core sequence or repeat unit is generally called motif. According to the motif length, tandem repeats +can be classified as microsatellites and minisatellites. Microsatellites are also known as simple sequence +repeats (SSRs) or short tandem repeats (STRs) with motif length of 1-6 bp. Minisatellites are also sometimes +referred to as variable number of tandem repeats (VNTRs) has longer motif length than micorsatellites. +The ``stria`` is a lightweight Python C extension for identification and analysis of short tandem repeats. +The ``stria`` enables to fastly identify both exact and imperfect SSRs and VNTRs from large numbers of DNA sequences. +The ``stria`` also provides command line tools for users to extract tandem repeats from Fasta files. + +%prep +%autosetup -n stria-0.1.3 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-stria -f filelist.lst +%dir %{python3_sitearch}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 0.1.3-1 +- Package Spec generated @@ -0,0 +1 @@ +5661a09ea1a201487a7220ba8ae9aa2e stria-0.1.3.tar.gz |
