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%global _empty_manifest_terminate_build 0
Name: python-stria
Version: 0.1.3
Release: 1
Summary: stria (short tandem repeat identification and analysis) is a python package for finding tandem repeats from DNA sequences
License: MIT
URL: https://github.com/lmdu/stria
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/cb/3c/3558007b857412a36d4bf4a93892860b1901a1753a04266a8b7a8f0f6716/stria-0.1.3.tar.gz
%description
A Tandem repeat (TR) in genomic sequence is a set of adjacent short DNA sequence repeated consecutively.
The core sequence or repeat unit is generally called motif. According to the motif length, tandem repeats
can be classified as microsatellites and minisatellites. Microsatellites are also known as simple sequence
repeats (SSRs) or short tandem repeats (STRs) with motif length of 1-6 bp. Minisatellites are also sometimes
referred to as variable number of tandem repeats (VNTRs) has longer motif length than micorsatellites.
The ``stria`` is a lightweight Python C extension for identification and analysis of short tandem repeats.
The ``stria`` enables to fastly identify both exact and imperfect SSRs and VNTRs from large numbers of DNA sequences.
The ``stria`` also provides command line tools for users to extract tandem repeats from Fasta files.
%package -n python3-stria
Summary: stria (short tandem repeat identification and analysis) is a python package for finding tandem repeats from DNA sequences
Provides: python-stria
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
BuildRequires: python3-cffi
BuildRequires: gcc
BuildRequires: gdb
%description -n python3-stria
A Tandem repeat (TR) in genomic sequence is a set of adjacent short DNA sequence repeated consecutively.
The core sequence or repeat unit is generally called motif. According to the motif length, tandem repeats
can be classified as microsatellites and minisatellites. Microsatellites are also known as simple sequence
repeats (SSRs) or short tandem repeats (STRs) with motif length of 1-6 bp. Minisatellites are also sometimes
referred to as variable number of tandem repeats (VNTRs) has longer motif length than micorsatellites.
The ``stria`` is a lightweight Python C extension for identification and analysis of short tandem repeats.
The ``stria`` enables to fastly identify both exact and imperfect SSRs and VNTRs from large numbers of DNA sequences.
The ``stria`` also provides command line tools for users to extract tandem repeats from Fasta files.
%package help
Summary: Development documents and examples for stria
Provides: python3-stria-doc
%description help
A Tandem repeat (TR) in genomic sequence is a set of adjacent short DNA sequence repeated consecutively.
The core sequence or repeat unit is generally called motif. According to the motif length, tandem repeats
can be classified as microsatellites and minisatellites. Microsatellites are also known as simple sequence
repeats (SSRs) or short tandem repeats (STRs) with motif length of 1-6 bp. Minisatellites are also sometimes
referred to as variable number of tandem repeats (VNTRs) has longer motif length than micorsatellites.
The ``stria`` is a lightweight Python C extension for identification and analysis of short tandem repeats.
The ``stria`` enables to fastly identify both exact and imperfect SSRs and VNTRs from large numbers of DNA sequences.
The ``stria`` also provides command line tools for users to extract tandem repeats from Fasta files.
%prep
%autosetup -n stria-0.1.3
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-stria -f filelist.lst
%dir %{python3_sitearch}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 0.1.3-1
- Package Spec generated
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