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diff --git a/python-tibanna.spec b/python-tibanna.spec new file mode 100644 index 0000000..9f4543c --- /dev/null +++ b/python-tibanna.spec @@ -0,0 +1,99 @@ +%global _empty_manifest_terminate_build 0 +Name: python-tibanna +Version: 3.3.0 +Release: 1 +Summary: Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud. +License: MIT +URL: http://github.com/4dn-dcic/tibanna +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/8c/0f/631ff1193158c34163c67f64c8bff0fa9f25eb056042a529640cfff217d7/tibanna-3.3.0.tar.gz +BuildArch: noarch + +Requires: python3-lambda-4dn +Requires: python3-boto3 +Requires: python3-botocore +Requires: python3-requests +Requires: python3-Benchmark-4dn +Requires: python3-tomlkit + +%description +Note: Starting `0.8.2`, Tibanna supports local CWL/WDL files as well as shell commands and Snakemake workflows. +Note 2: As of Tibanna version `2.0.0`, Python 3.6 is no longer supported. Please switch to Python 3.8! Python 3.7 is also supported as a fallback, but please prefer 3.8 if you can. +Note 3: Starting `0.8.0`, one no longer needs to `git clone` the Tibanna repo. +* Please switch from `invoke <command>` to `tibanna <command>`! +* We also renovated the Python API as an inheritable class to allow development around tibanna. +For more details, see Tibanna [**Documentation**](http://tibanna.readthedocs.io/en/latest). +* Also check out our [**paper in _Bioinformatics_**](https://doi.org/10.1093/bioinformatics/btz379). +* A preprint can also be found on [**biorxiv**](https://www.biorxiv.org/content/10.1101/440974v3). + +%package -n python3-tibanna +Summary: Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud. +Provides: python-tibanna +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-tibanna +Note: Starting `0.8.2`, Tibanna supports local CWL/WDL files as well as shell commands and Snakemake workflows. +Note 2: As of Tibanna version `2.0.0`, Python 3.6 is no longer supported. Please switch to Python 3.8! Python 3.7 is also supported as a fallback, but please prefer 3.8 if you can. +Note 3: Starting `0.8.0`, one no longer needs to `git clone` the Tibanna repo. +* Please switch from `invoke <command>` to `tibanna <command>`! +* We also renovated the Python API as an inheritable class to allow development around tibanna. +For more details, see Tibanna [**Documentation**](http://tibanna.readthedocs.io/en/latest). +* Also check out our [**paper in _Bioinformatics_**](https://doi.org/10.1093/bioinformatics/btz379). +* A preprint can also be found on [**biorxiv**](https://www.biorxiv.org/content/10.1101/440974v3). + +%package help +Summary: Development documents and examples for tibanna +Provides: python3-tibanna-doc +%description help +Note: Starting `0.8.2`, Tibanna supports local CWL/WDL files as well as shell commands and Snakemake workflows. +Note 2: As of Tibanna version `2.0.0`, Python 3.6 is no longer supported. Please switch to Python 3.8! Python 3.7 is also supported as a fallback, but please prefer 3.8 if you can. +Note 3: Starting `0.8.0`, one no longer needs to `git clone` the Tibanna repo. +* Please switch from `invoke <command>` to `tibanna <command>`! +* We also renovated the Python API as an inheritable class to allow development around tibanna. +For more details, see Tibanna [**Documentation**](http://tibanna.readthedocs.io/en/latest). +* Also check out our [**paper in _Bioinformatics_**](https://doi.org/10.1093/bioinformatics/btz379). +* A preprint can also be found on [**biorxiv**](https://www.biorxiv.org/content/10.1101/440974v3). + +%prep +%autosetup -n tibanna-3.3.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-tibanna -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Tue Apr 11 2023 Python_Bot <Python_Bot@openeuler.org> - 3.3.0-1 +- Package Spec generated |