1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
|
%global _empty_manifest_terminate_build 0
Name: python-tibanna
Version: 3.3.0
Release: 1
Summary: Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud.
License: MIT
URL: http://github.com/4dn-dcic/tibanna
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/8c/0f/631ff1193158c34163c67f64c8bff0fa9f25eb056042a529640cfff217d7/tibanna-3.3.0.tar.gz
BuildArch: noarch
Requires: python3-lambda-4dn
Requires: python3-boto3
Requires: python3-botocore
Requires: python3-requests
Requires: python3-Benchmark-4dn
Requires: python3-tomlkit
%description
Note: Starting `0.8.2`, Tibanna supports local CWL/WDL files as well as shell commands and Snakemake workflows.
Note 2: As of Tibanna version `2.0.0`, Python 3.6 is no longer supported. Please switch to Python 3.8! Python 3.7 is also supported as a fallback, but please prefer 3.8 if you can.
Note 3: Starting `0.8.0`, one no longer needs to `git clone` the Tibanna repo.
* Please switch from `invoke <command>` to `tibanna <command>`!
* We also renovated the Python API as an inheritable class to allow development around tibanna.
For more details, see Tibanna [**Documentation**](http://tibanna.readthedocs.io/en/latest).
* Also check out our [**paper in _Bioinformatics_**](https://doi.org/10.1093/bioinformatics/btz379).
* A preprint can also be found on [**biorxiv**](https://www.biorxiv.org/content/10.1101/440974v3).
%package -n python3-tibanna
Summary: Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud.
Provides: python-tibanna
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-tibanna
Note: Starting `0.8.2`, Tibanna supports local CWL/WDL files as well as shell commands and Snakemake workflows.
Note 2: As of Tibanna version `2.0.0`, Python 3.6 is no longer supported. Please switch to Python 3.8! Python 3.7 is also supported as a fallback, but please prefer 3.8 if you can.
Note 3: Starting `0.8.0`, one no longer needs to `git clone` the Tibanna repo.
* Please switch from `invoke <command>` to `tibanna <command>`!
* We also renovated the Python API as an inheritable class to allow development around tibanna.
For more details, see Tibanna [**Documentation**](http://tibanna.readthedocs.io/en/latest).
* Also check out our [**paper in _Bioinformatics_**](https://doi.org/10.1093/bioinformatics/btz379).
* A preprint can also be found on [**biorxiv**](https://www.biorxiv.org/content/10.1101/440974v3).
%package help
Summary: Development documents and examples for tibanna
Provides: python3-tibanna-doc
%description help
Note: Starting `0.8.2`, Tibanna supports local CWL/WDL files as well as shell commands and Snakemake workflows.
Note 2: As of Tibanna version `2.0.0`, Python 3.6 is no longer supported. Please switch to Python 3.8! Python 3.7 is also supported as a fallback, but please prefer 3.8 if you can.
Note 3: Starting `0.8.0`, one no longer needs to `git clone` the Tibanna repo.
* Please switch from `invoke <command>` to `tibanna <command>`!
* We also renovated the Python API as an inheritable class to allow development around tibanna.
For more details, see Tibanna [**Documentation**](http://tibanna.readthedocs.io/en/latest).
* Also check out our [**paper in _Bioinformatics_**](https://doi.org/10.1093/bioinformatics/btz379).
* A preprint can also be found on [**biorxiv**](https://www.biorxiv.org/content/10.1101/440974v3).
%prep
%autosetup -n tibanna-3.3.0
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-tibanna -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Tue Apr 11 2023 Python_Bot <Python_Bot@openeuler.org> - 3.3.0-1
- Package Spec generated
|
