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authorCoprDistGit <infra@openeuler.org>2023-06-20 05:03:07 +0000
committerCoprDistGit <infra@openeuler.org>2023-06-20 05:03:07 +0000
commit34040a586cc0cd23420365bda8abbc8ea8ed4079 (patch)
treeca805bc40e2402a85769516c133c489f678fe5ce
parent175c8b8ed02c717cf3adc3e0df7e8cdaab0808eb (diff)
automatic import of python-bio2bel-keggopeneuler20.03
-rw-r--r--.gitignore1
-rw-r--r--python-bio2bel-kegg.spec105
-rw-r--r--sources1
3 files changed, 107 insertions, 0 deletions
diff --git a/.gitignore b/.gitignore
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--- a/.gitignore
+++ b/.gitignore
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+/bio2bel_kegg-0.3.0.tar.gz
diff --git a/python-bio2bel-kegg.spec b/python-bio2bel-kegg.spec
new file mode 100644
index 0000000..9d0169e
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+++ b/python-bio2bel-kegg.spec
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+%global _empty_manifest_terminate_build 0
+Name: python-bio2bel-kegg
+Version: 0.3.0
+Release: 1
+Summary: A package for converting KEGG gene sets into BEL
+License: MIT
+URL: https://github.com/bio2bel/kegg
+Source0: https://mirrors.aliyun.com/pypi/web/packages/8a/36/7915e90c2c4331010f46aa246026b08aeb8a2e34ff00e0b7c2c26ce275a7/bio2bel_kegg-0.3.0.tar.gz
+BuildArch: noarch
+
+Requires: python3-pybel
+Requires: python3-click
+Requires: python3-bio2bel[web]
+Requires: python3-pyobo
+Requires: python3-tqdm
+Requires: python3-sqlalchemy
+Requires: python3-requests
+Requires: python3-pandas
+Requires: python3-sphinx
+Requires: python3-sphinx-rtd-theme
+Requires: python3-sphinx-click
+Requires: python3-sphinx-autodoc-typehints
+
+%description
+This package allows the enrichment of BEL networks with KEGG information by wrapping its RESTful API.
+Furthermore, it is integrated in the `ComPath environment <https://github.com/ComPath>`_ for pathway database comparison.
+If you find this package useful, please consider citing [domingofernandez2018]_:
+ and curating mappings across pathway databases <https://doi.org/10.1038/s41540-018-0078-8>`_.
+ *Npj Systems Biology and Applications*, __5__(1), 3.
+**Warning** This package creates ``partOf`` relationships in BEL, but does not convert KEGG mechanistic
+relationships to BEL. That functionality is implemented in the
+`PathMe project <https://github.com/pathwaymerger/pathme>`_.
+
+%package -n python3-bio2bel-kegg
+Summary: A package for converting KEGG gene sets into BEL
+Provides: python-bio2bel-kegg
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+%description -n python3-bio2bel-kegg
+This package allows the enrichment of BEL networks with KEGG information by wrapping its RESTful API.
+Furthermore, it is integrated in the `ComPath environment <https://github.com/ComPath>`_ for pathway database comparison.
+If you find this package useful, please consider citing [domingofernandez2018]_:
+ and curating mappings across pathway databases <https://doi.org/10.1038/s41540-018-0078-8>`_.
+ *Npj Systems Biology and Applications*, __5__(1), 3.
+**Warning** This package creates ``partOf`` relationships in BEL, but does not convert KEGG mechanistic
+relationships to BEL. That functionality is implemented in the
+`PathMe project <https://github.com/pathwaymerger/pathme>`_.
+
+%package help
+Summary: Development documents and examples for bio2bel-kegg
+Provides: python3-bio2bel-kegg-doc
+%description help
+This package allows the enrichment of BEL networks with KEGG information by wrapping its RESTful API.
+Furthermore, it is integrated in the `ComPath environment <https://github.com/ComPath>`_ for pathway database comparison.
+If you find this package useful, please consider citing [domingofernandez2018]_:
+ and curating mappings across pathway databases <https://doi.org/10.1038/s41540-018-0078-8>`_.
+ *Npj Systems Biology and Applications*, __5__(1), 3.
+**Warning** This package creates ``partOf`` relationships in BEL, but does not convert KEGG mechanistic
+relationships to BEL. That functionality is implemented in the
+`PathMe project <https://github.com/pathwaymerger/pathme>`_.
+
+%prep
+%autosetup -n bio2bel_kegg-0.3.0
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-bio2bel-kegg -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Tue Jun 20 2023 Python_Bot <Python_Bot@openeuler.org> - 0.3.0-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..6c8500c
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+22227f7cfba17241898022a55a8f1157 bio2bel_kegg-0.3.0.tar.gz