automatic import of python-cnvkitopeneuler20.03

3 files changed, 86 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
index e69de29..de616a6 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/CNVkit-0.9.10.tar.gz
diff --git a/python-cnvkit.spec b/python-cnvkit.spec
new file mode 100644
index 0000000..2e553c0
--- /dev/null
+++ b/python-cnvkit.spec
@@ -0,0 +1,84 @@
+%global _empty_manifest_terminate_build 0
+Name:		python-CNVkit
+Version:	0.9.10
+Release:	1
+Summary:	Copy number variation toolkit for high-throughput sequencing.
+License:	Apache-2.0
+URL:		https://pypi.org/project/CNVkit/
+Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/97/bf/89948ad0018712eac88313daa1350f867154926823d7ae1952e61afad83c/CNVkit-0.9.10.tar.gz
+BuildArch:	noarch
+
+Requires:	python3-biopython
+Requires:	python3-matplotlib
+Requires:	python3-numpy
+Requires:	python3-pandas
+Requires:	python3-pomegranate
+Requires:	python3-pyfaidx
+Requires:	python3-pysam
+Requires:	python3-reportlab
+Requires:	python3-scikit-learn
+Requires:	python3-scipy
+Requires:	python3-pytest
+Requires:	python3-pytest-cov
+
+%description
+
+
+%package -n python3-CNVkit
+Summary:	Copy number variation toolkit for high-throughput sequencing.
+Provides:	python-CNVkit
+BuildRequires:	python3-devel
+BuildRequires:	python3-setuptools
+BuildRequires:	python3-pip
+%description -n python3-CNVkit
+
+
+%package help
+Summary:	Development documents and examples for CNVkit
+Provides:	python3-CNVkit-doc
+%description help
+
+
+%prep
+%autosetup -n CNVkit-0.9.10
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-CNVkit -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 0.9.10-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..a3a666a
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+ac1f5b205eafea2a74047eb1d20eb7be  CNVkit-0.9.10.tar.gz