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| -rw-r--r-- | .gitignore | 1 | ||||
| -rw-r--r-- | python-cnvkit.spec | 84 | ||||
| -rw-r--r-- | sources | 1 |
3 files changed, 86 insertions, 0 deletions
@@ -0,0 +1 @@ +/CNVkit-0.9.10.tar.gz diff --git a/python-cnvkit.spec b/python-cnvkit.spec new file mode 100644 index 0000000..2e553c0 --- /dev/null +++ b/python-cnvkit.spec @@ -0,0 +1,84 @@ +%global _empty_manifest_terminate_build 0 +Name: python-CNVkit +Version: 0.9.10 +Release: 1 +Summary: Copy number variation toolkit for high-throughput sequencing. +License: Apache-2.0 +URL: https://pypi.org/project/CNVkit/ +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/97/bf/89948ad0018712eac88313daa1350f867154926823d7ae1952e61afad83c/CNVkit-0.9.10.tar.gz +BuildArch: noarch + +Requires: python3-biopython +Requires: python3-matplotlib +Requires: python3-numpy +Requires: python3-pandas +Requires: python3-pomegranate +Requires: python3-pyfaidx +Requires: python3-pysam +Requires: python3-reportlab +Requires: python3-scikit-learn +Requires: python3-scipy +Requires: python3-pytest +Requires: python3-pytest-cov + +%description + + +%package -n python3-CNVkit +Summary: Copy number variation toolkit for high-throughput sequencing. +Provides: python-CNVkit +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-CNVkit + + +%package help +Summary: Development documents and examples for CNVkit +Provides: python3-CNVkit-doc +%description help + + +%prep +%autosetup -n CNVkit-0.9.10 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-CNVkit -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 0.9.10-1 +- Package Spec generated @@ -0,0 +1 @@ +ac1f5b205eafea2a74047eb1d20eb7be CNVkit-0.9.10.tar.gz |