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diff --git a/python-demesdraw.spec b/python-demesdraw.spec new file mode 100644 index 0000000..167c32c --- /dev/null +++ b/python-demesdraw.spec @@ -0,0 +1,262 @@ +%global _empty_manifest_terminate_build 0 +Name: python-demesdraw +Version: 0.4.0 +Release: 1 +Summary: drawing tools for Demes demographic models +License: ISC +URL: https://github.com/grahamgower/demesdraw +Source0: https://mirrors.aliyun.com/pypi/web/packages/66/94/75d488794b168a193e2f86fe8bc6e3a0b2c8c8cb59c9261c46587644785e/demesdraw-0.4.0.tar.gz +BuildArch: noarch + +Requires: python3-demes +Requires: python3-matplotlib +Requires: python3-numpy +Requires: python3-scipy + +%description +# DemesDraw + +`demesdraw` is a Python package that contains drawing functions for +[Demes](https://popsim-consortium.github.io/demes-spec-docs/main/) +demographic models, using `matplotlib` to create the figures. +DemesDraw offers both a command line interface, and a Python API. +Feedback is very welcome. + + +# Installation + +Install with pip: +``` +$ python3 -m pip install demesdraw +``` + +Or with conda: +``` +$ conda install -c conda-forge demesdraw +``` + +# Example usage + +## Command line interface (CLI) + +The CLI can be used to quickly plot a Demes YAML file. +Any file format supported by matplotlib can be specified, +but a vector format such as svg or pdf is recommended. + +``` +$ demesdraw tubes --log-time \ + examples/stdpopsim/HomSap__AmericanAdmixture_4B11.yaml \ + AmericanAdmixture_4B11_tubes.svg +``` + + + + +## Python API + +Compared with the CLI, the Python API provides additional control. +In the following example, the horizontal positions of the demes +are chosen manually and the names of extinct demes are moved to +a legend. + +```python +import demes +import demesdraw + +graph = demes.load("examples/stdpopsim/HomSap__AmericanAdmixture_4B11.yaml") +w = demesdraw.utils.separation_heuristic(graph) +positions = dict(ancestral=0, AMH=0, AFR=0, OOA=1.5 * w, EAS=1 * w, EUR=2 * w, ADMIX=-w) +ax = demesdraw.tubes(graph, log_time=True, positions=positions, labels="xticks-legend") +ax.figure.savefig("AmericanAdmixture_4B11_tubes_custom.svg") +``` + + + +# Documentation + +Complete API and CLI details are available in the +[DemesDraw documentation](https://grahamgower.github.io/demesdraw). + + +%package -n python3-demesdraw +Summary: drawing tools for Demes demographic models +Provides: python-demesdraw +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-demesdraw +# DemesDraw + +`demesdraw` is a Python package that contains drawing functions for +[Demes](https://popsim-consortium.github.io/demes-spec-docs/main/) +demographic models, using `matplotlib` to create the figures. +DemesDraw offers both a command line interface, and a Python API. +Feedback is very welcome. + + +# Installation + +Install with pip: +``` +$ python3 -m pip install demesdraw +``` + +Or with conda: +``` +$ conda install -c conda-forge demesdraw +``` + +# Example usage + +## Command line interface (CLI) + +The CLI can be used to quickly plot a Demes YAML file. +Any file format supported by matplotlib can be specified, +but a vector format such as svg or pdf is recommended. + +``` +$ demesdraw tubes --log-time \ + examples/stdpopsim/HomSap__AmericanAdmixture_4B11.yaml \ + AmericanAdmixture_4B11_tubes.svg +``` + + + + +## Python API + +Compared with the CLI, the Python API provides additional control. +In the following example, the horizontal positions of the demes +are chosen manually and the names of extinct demes are moved to +a legend. + +```python +import demes +import demesdraw + +graph = demes.load("examples/stdpopsim/HomSap__AmericanAdmixture_4B11.yaml") +w = demesdraw.utils.separation_heuristic(graph) +positions = dict(ancestral=0, AMH=0, AFR=0, OOA=1.5 * w, EAS=1 * w, EUR=2 * w, ADMIX=-w) +ax = demesdraw.tubes(graph, log_time=True, positions=positions, labels="xticks-legend") +ax.figure.savefig("AmericanAdmixture_4B11_tubes_custom.svg") +``` + + + +# Documentation + +Complete API and CLI details are available in the +[DemesDraw documentation](https://grahamgower.github.io/demesdraw). + + +%package help +Summary: Development documents and examples for demesdraw +Provides: python3-demesdraw-doc +%description help +# DemesDraw + +`demesdraw` is a Python package that contains drawing functions for +[Demes](https://popsim-consortium.github.io/demes-spec-docs/main/) +demographic models, using `matplotlib` to create the figures. +DemesDraw offers both a command line interface, and a Python API. +Feedback is very welcome. + + +# Installation + +Install with pip: +``` +$ python3 -m pip install demesdraw +``` + +Or with conda: +``` +$ conda install -c conda-forge demesdraw +``` + +# Example usage + +## Command line interface (CLI) + +The CLI can be used to quickly plot a Demes YAML file. +Any file format supported by matplotlib can be specified, +but a vector format such as svg or pdf is recommended. + +``` +$ demesdraw tubes --log-time \ + examples/stdpopsim/HomSap__AmericanAdmixture_4B11.yaml \ + AmericanAdmixture_4B11_tubes.svg +``` + + + + +## Python API + +Compared with the CLI, the Python API provides additional control. +In the following example, the horizontal positions of the demes +are chosen manually and the names of extinct demes are moved to +a legend. + +```python +import demes +import demesdraw + +graph = demes.load("examples/stdpopsim/HomSap__AmericanAdmixture_4B11.yaml") +w = demesdraw.utils.separation_heuristic(graph) +positions = dict(ancestral=0, AMH=0, AFR=0, OOA=1.5 * w, EAS=1 * w, EUR=2 * w, ADMIX=-w) +ax = demesdraw.tubes(graph, log_time=True, positions=positions, labels="xticks-legend") +ax.figure.savefig("AmericanAdmixture_4B11_tubes_custom.svg") +``` + + + +# Documentation + +Complete API and CLI details are available in the +[DemesDraw documentation](https://grahamgower.github.io/demesdraw). + + +%prep +%autosetup -n demesdraw-0.4.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-demesdraw -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Tue Jun 20 2023 Python_Bot <Python_Bot@openeuler.org> - 0.4.0-1 +- Package Spec generated |