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|
%global _empty_manifest_terminate_build 0
Name: python-demesdraw
Version: 0.4.0
Release: 1
Summary: drawing tools for Demes demographic models
License: ISC
URL: https://github.com/grahamgower/demesdraw
Source0: https://mirrors.aliyun.com/pypi/web/packages/66/94/75d488794b168a193e2f86fe8bc6e3a0b2c8c8cb59c9261c46587644785e/demesdraw-0.4.0.tar.gz
BuildArch: noarch
Requires: python3-demes
Requires: python3-matplotlib
Requires: python3-numpy
Requires: python3-scipy
%description
# DemesDraw
`demesdraw` is a Python package that contains drawing functions for
[Demes](https://popsim-consortium.github.io/demes-spec-docs/main/)
demographic models, using `matplotlib` to create the figures.
DemesDraw offers both a command line interface, and a Python API.
Feedback is very welcome.
# Installation
Install with pip:
```
$ python3 -m pip install demesdraw
```
Or with conda:
```
$ conda install -c conda-forge demesdraw
```
# Example usage
## Command line interface (CLI)
The CLI can be used to quickly plot a Demes YAML file.
Any file format supported by matplotlib can be specified,
but a vector format such as svg or pdf is recommended.
```
$ demesdraw tubes --log-time \
examples/stdpopsim/HomSap__AmericanAdmixture_4B11.yaml \
AmericanAdmixture_4B11_tubes.svg
```
## Python API
Compared with the CLI, the Python API provides additional control.
In the following example, the horizontal positions of the demes
are chosen manually and the names of extinct demes are moved to
a legend.
```python
import demes
import demesdraw
graph = demes.load("examples/stdpopsim/HomSap__AmericanAdmixture_4B11.yaml")
w = demesdraw.utils.separation_heuristic(graph)
positions = dict(ancestral=0, AMH=0, AFR=0, OOA=1.5 * w, EAS=1 * w, EUR=2 * w, ADMIX=-w)
ax = demesdraw.tubes(graph, log_time=True, positions=positions, labels="xticks-legend")
ax.figure.savefig("AmericanAdmixture_4B11_tubes_custom.svg")
```
# Documentation
Complete API and CLI details are available in the
[DemesDraw documentation](https://grahamgower.github.io/demesdraw).
%package -n python3-demesdraw
Summary: drawing tools for Demes demographic models
Provides: python-demesdraw
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-demesdraw
# DemesDraw
`demesdraw` is a Python package that contains drawing functions for
[Demes](https://popsim-consortium.github.io/demes-spec-docs/main/)
demographic models, using `matplotlib` to create the figures.
DemesDraw offers both a command line interface, and a Python API.
Feedback is very welcome.
# Installation
Install with pip:
```
$ python3 -m pip install demesdraw
```
Or with conda:
```
$ conda install -c conda-forge demesdraw
```
# Example usage
## Command line interface (CLI)
The CLI can be used to quickly plot a Demes YAML file.
Any file format supported by matplotlib can be specified,
but a vector format such as svg or pdf is recommended.
```
$ demesdraw tubes --log-time \
examples/stdpopsim/HomSap__AmericanAdmixture_4B11.yaml \
AmericanAdmixture_4B11_tubes.svg
```
## Python API
Compared with the CLI, the Python API provides additional control.
In the following example, the horizontal positions of the demes
are chosen manually and the names of extinct demes are moved to
a legend.
```python
import demes
import demesdraw
graph = demes.load("examples/stdpopsim/HomSap__AmericanAdmixture_4B11.yaml")
w = demesdraw.utils.separation_heuristic(graph)
positions = dict(ancestral=0, AMH=0, AFR=0, OOA=1.5 * w, EAS=1 * w, EUR=2 * w, ADMIX=-w)
ax = demesdraw.tubes(graph, log_time=True, positions=positions, labels="xticks-legend")
ax.figure.savefig("AmericanAdmixture_4B11_tubes_custom.svg")
```
# Documentation
Complete API and CLI details are available in the
[DemesDraw documentation](https://grahamgower.github.io/demesdraw).
%package help
Summary: Development documents and examples for demesdraw
Provides: python3-demesdraw-doc
%description help
# DemesDraw
`demesdraw` is a Python package that contains drawing functions for
[Demes](https://popsim-consortium.github.io/demes-spec-docs/main/)
demographic models, using `matplotlib` to create the figures.
DemesDraw offers both a command line interface, and a Python API.
Feedback is very welcome.
# Installation
Install with pip:
```
$ python3 -m pip install demesdraw
```
Or with conda:
```
$ conda install -c conda-forge demesdraw
```
# Example usage
## Command line interface (CLI)
The CLI can be used to quickly plot a Demes YAML file.
Any file format supported by matplotlib can be specified,
but a vector format such as svg or pdf is recommended.
```
$ demesdraw tubes --log-time \
examples/stdpopsim/HomSap__AmericanAdmixture_4B11.yaml \
AmericanAdmixture_4B11_tubes.svg
```
## Python API
Compared with the CLI, the Python API provides additional control.
In the following example, the horizontal positions of the demes
are chosen manually and the names of extinct demes are moved to
a legend.
```python
import demes
import demesdraw
graph = demes.load("examples/stdpopsim/HomSap__AmericanAdmixture_4B11.yaml")
w = demesdraw.utils.separation_heuristic(graph)
positions = dict(ancestral=0, AMH=0, AFR=0, OOA=1.5 * w, EAS=1 * w, EUR=2 * w, ADMIX=-w)
ax = demesdraw.tubes(graph, log_time=True, positions=positions, labels="xticks-legend")
ax.figure.savefig("AmericanAdmixture_4B11_tubes_custom.svg")
```
# Documentation
Complete API and CLI details are available in the
[DemesDraw documentation](https://grahamgower.github.io/demesdraw).
%prep
%autosetup -n demesdraw-0.4.0
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-demesdraw -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Tue Jun 20 2023 Python_Bot <Python_Bot@openeuler.org> - 0.4.0-1
- Package Spec generated
|
