diff options
author | CoprDistGit <infra@openeuler.org> | 2023-05-31 07:20:55 +0000 |
---|---|---|
committer | CoprDistGit <infra@openeuler.org> | 2023-05-31 07:20:55 +0000 |
commit | 33252ce492bf39ffa983ffeb2d3eab0adcdc24b4 (patch) | |
tree | 2bed4d928d5b3edbaf8ed27bf250d09940c84470 | |
parent | 2e321c34a3015f6b32ad9017f27aac7721b08f96 (diff) |
automatic import of python-nanoplotter
-rw-r--r-- | .gitignore | 1 | ||||
-rw-r--r-- | python-nanoplotter.spec | 162 | ||||
-rw-r--r-- | sources | 1 |
3 files changed, 164 insertions, 0 deletions
@@ -0,0 +1 @@ +/nanoplotter-1.10.0.tar.gz diff --git a/python-nanoplotter.spec b/python-nanoplotter.spec new file mode 100644 index 0000000..81a9983 --- /dev/null +++ b/python-nanoplotter.spec @@ -0,0 +1,162 @@ +%global _empty_manifest_terminate_build 0 +Name: python-nanoplotter +Version: 1.10.0 +Release: 1 +Summary: Plotting functions of Oxford Nanopore sequencing data +License: MIT +URL: https://github.com/wdecoster/nanoplotter +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/3f/54/d5af6a13c10fa93e0b64efec58ab5a7aba542465bf7a2c383e5a95b86d67/nanoplotter-1.10.0.tar.gz +BuildArch: noarch + + +%description +# nanoplotter +This module provides functions for plotting data extracted from Oxford Nanopore sequencing reads and alignments, but some of it's functions can also be used for other applications. + +[](https://twitter.com/wouter_decoster) +[](https://anaconda.org/bioconda/nanoplotter) +[](https://travis-ci.org/wdecoster/nanoplotter) + + + +## FUNCTIONS +* Check if a specified color is a valid matplotlib color `checkvalidColor(color)` +* Check if a specified output format is valid `checkvalidFormat(format)` +* Create a bivariate plot with dots, hexbins and/or kernel density estimates. Also arguments for specifying axis names, color and xlim/ylim. `scatter(x, y, names, path, color, format, plots, stat=None, log=False, minvalx=0, minvaly=0)` +* Create cumulative yield plot and evaluate read length and quality over time `timePlots(df, path, color, format)` +* Create length distribution histogram and density curve `lengthPlots(array, name, path, n50, color, format, log=False)` +* Create flowcell physical layout in numpy array `makeLayout()` +* Present the activity (number of reads) per channel on the flowcell as a heatmap `spatialHeatmap(array, title, path, color, format)` + + +## INSTALLATION +```bash +pip install nanoplotter +``` +or +[](https://anaconda.org/bioconda/nanoplotter) +``` +conda install -c bioconda nanoplotter +``` + +## CITATION +If you use this tool, please consider citing our [publication](https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939). + +%package -n python3-nanoplotter +Summary: Plotting functions of Oxford Nanopore sequencing data +Provides: python-nanoplotter +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-nanoplotter +# nanoplotter +This module provides functions for plotting data extracted from Oxford Nanopore sequencing reads and alignments, but some of it's functions can also be used for other applications. + +[](https://twitter.com/wouter_decoster) +[](https://anaconda.org/bioconda/nanoplotter) +[](https://travis-ci.org/wdecoster/nanoplotter) + + + +## FUNCTIONS +* Check if a specified color is a valid matplotlib color `checkvalidColor(color)` +* Check if a specified output format is valid `checkvalidFormat(format)` +* Create a bivariate plot with dots, hexbins and/or kernel density estimates. Also arguments for specifying axis names, color and xlim/ylim. `scatter(x, y, names, path, color, format, plots, stat=None, log=False, minvalx=0, minvaly=0)` +* Create cumulative yield plot and evaluate read length and quality over time `timePlots(df, path, color, format)` +* Create length distribution histogram and density curve `lengthPlots(array, name, path, n50, color, format, log=False)` +* Create flowcell physical layout in numpy array `makeLayout()` +* Present the activity (number of reads) per channel on the flowcell as a heatmap `spatialHeatmap(array, title, path, color, format)` + + +## INSTALLATION +```bash +pip install nanoplotter +``` +or +[](https://anaconda.org/bioconda/nanoplotter) +``` +conda install -c bioconda nanoplotter +``` + +## CITATION +If you use this tool, please consider citing our [publication](https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939). + +%package help +Summary: Development documents and examples for nanoplotter +Provides: python3-nanoplotter-doc +%description help +# nanoplotter +This module provides functions for plotting data extracted from Oxford Nanopore sequencing reads and alignments, but some of it's functions can also be used for other applications. + +[](https://twitter.com/wouter_decoster) +[](https://anaconda.org/bioconda/nanoplotter) +[](https://travis-ci.org/wdecoster/nanoplotter) + + + +## FUNCTIONS +* Check if a specified color is a valid matplotlib color `checkvalidColor(color)` +* Check if a specified output format is valid `checkvalidFormat(format)` +* Create a bivariate plot with dots, hexbins and/or kernel density estimates. Also arguments for specifying axis names, color and xlim/ylim. `scatter(x, y, names, path, color, format, plots, stat=None, log=False, minvalx=0, minvaly=0)` +* Create cumulative yield plot and evaluate read length and quality over time `timePlots(df, path, color, format)` +* Create length distribution histogram and density curve `lengthPlots(array, name, path, n50, color, format, log=False)` +* Create flowcell physical layout in numpy array `makeLayout()` +* Present the activity (number of reads) per channel on the flowcell as a heatmap `spatialHeatmap(array, title, path, color, format)` + + +## INSTALLATION +```bash +pip install nanoplotter +``` +or +[](https://anaconda.org/bioconda/nanoplotter) +``` +conda install -c bioconda nanoplotter +``` + +## CITATION +If you use this tool, please consider citing our [publication](https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939). + +%prep +%autosetup -n nanoplotter-1.10.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-nanoplotter -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Wed May 31 2023 Python_Bot <Python_Bot@openeuler.org> - 1.10.0-1 +- Package Spec generated @@ -0,0 +1 @@ +49110806b0114092a370a43d0f1866fb nanoplotter-1.10.0.tar.gz |