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authorCoprDistGit <infra@openeuler.org>2023-05-31 07:20:55 +0000
committerCoprDistGit <infra@openeuler.org>2023-05-31 07:20:55 +0000
commit33252ce492bf39ffa983ffeb2d3eab0adcdc24b4 (patch)
tree2bed4d928d5b3edbaf8ed27bf250d09940c84470
parent2e321c34a3015f6b32ad9017f27aac7721b08f96 (diff)
automatic import of python-nanoplotter
-rw-r--r--.gitignore1
-rw-r--r--python-nanoplotter.spec162
-rw-r--r--sources1
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diff --git a/.gitignore b/.gitignore
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+/nanoplotter-1.10.0.tar.gz
diff --git a/python-nanoplotter.spec b/python-nanoplotter.spec
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+%global _empty_manifest_terminate_build 0
+Name: python-nanoplotter
+Version: 1.10.0
+Release: 1
+Summary: Plotting functions of Oxford Nanopore sequencing data
+License: MIT
+URL: https://github.com/wdecoster/nanoplotter
+Source0: https://mirrors.nju.edu.cn/pypi/web/packages/3f/54/d5af6a13c10fa93e0b64efec58ab5a7aba542465bf7a2c383e5a95b86d67/nanoplotter-1.10.0.tar.gz
+BuildArch: noarch
+
+
+%description
+# nanoplotter
+This module provides functions for plotting data extracted from Oxford Nanopore sequencing reads and alignments, but some of it's functions can also be used for other applications.
+
+[![Twitter URL](https://img.shields.io/twitter/url/https/twitter.com/wouter_decoster.svg?style=social&label=Follow%20%40wouter_decoster)](https://twitter.com/wouter_decoster)
+[![install with conda](https://anaconda.org/bioconda/nanoplotter/badges/installer/conda.svg)](https://anaconda.org/bioconda/nanoplotter)
+[![Build Status](https://travis-ci.org/wdecoster/nanoplotter.svg?branch=master)](https://travis-ci.org/wdecoster/nanoplotter)
+
+
+
+## FUNCTIONS
+* Check if a specified color is a valid matplotlib color `checkvalidColor(color)`
+* Check if a specified output format is valid `checkvalidFormat(format)`
+* Create a bivariate plot with dots, hexbins and/or kernel density estimates. Also arguments for specifying axis names, color and xlim/ylim. `scatter(x, y, names, path, color, format, plots, stat=None, log=False, minvalx=0, minvaly=0)`
+* Create cumulative yield plot and evaluate read length and quality over time `timePlots(df, path, color, format)`
+* Create length distribution histogram and density curve `lengthPlots(array, name, path, n50, color, format, log=False)`
+* Create flowcell physical layout in numpy array `makeLayout()`
+* Present the activity (number of reads) per channel on the flowcell as a heatmap `spatialHeatmap(array, title, path, color, format)`
+
+
+## INSTALLATION
+```bash
+pip install nanoplotter
+```
+or
+[![install with conda](https://anaconda.org/bioconda/nanoplotter/badges/installer/conda.svg)](https://anaconda.org/bioconda/nanoplotter)
+```
+conda install -c bioconda nanoplotter
+```
+
+## CITATION
+If you use this tool, please consider citing our [publication](https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939).
+
+%package -n python3-nanoplotter
+Summary: Plotting functions of Oxford Nanopore sequencing data
+Provides: python-nanoplotter
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+%description -n python3-nanoplotter
+# nanoplotter
+This module provides functions for plotting data extracted from Oxford Nanopore sequencing reads and alignments, but some of it's functions can also be used for other applications.
+
+[![Twitter URL](https://img.shields.io/twitter/url/https/twitter.com/wouter_decoster.svg?style=social&label=Follow%20%40wouter_decoster)](https://twitter.com/wouter_decoster)
+[![install with conda](https://anaconda.org/bioconda/nanoplotter/badges/installer/conda.svg)](https://anaconda.org/bioconda/nanoplotter)
+[![Build Status](https://travis-ci.org/wdecoster/nanoplotter.svg?branch=master)](https://travis-ci.org/wdecoster/nanoplotter)
+
+
+
+## FUNCTIONS
+* Check if a specified color is a valid matplotlib color `checkvalidColor(color)`
+* Check if a specified output format is valid `checkvalidFormat(format)`
+* Create a bivariate plot with dots, hexbins and/or kernel density estimates. Also arguments for specifying axis names, color and xlim/ylim. `scatter(x, y, names, path, color, format, plots, stat=None, log=False, minvalx=0, minvaly=0)`
+* Create cumulative yield plot and evaluate read length and quality over time `timePlots(df, path, color, format)`
+* Create length distribution histogram and density curve `lengthPlots(array, name, path, n50, color, format, log=False)`
+* Create flowcell physical layout in numpy array `makeLayout()`
+* Present the activity (number of reads) per channel on the flowcell as a heatmap `spatialHeatmap(array, title, path, color, format)`
+
+
+## INSTALLATION
+```bash
+pip install nanoplotter
+```
+or
+[![install with conda](https://anaconda.org/bioconda/nanoplotter/badges/installer/conda.svg)](https://anaconda.org/bioconda/nanoplotter)
+```
+conda install -c bioconda nanoplotter
+```
+
+## CITATION
+If you use this tool, please consider citing our [publication](https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939).
+
+%package help
+Summary: Development documents and examples for nanoplotter
+Provides: python3-nanoplotter-doc
+%description help
+# nanoplotter
+This module provides functions for plotting data extracted from Oxford Nanopore sequencing reads and alignments, but some of it's functions can also be used for other applications.
+
+[![Twitter URL](https://img.shields.io/twitter/url/https/twitter.com/wouter_decoster.svg?style=social&label=Follow%20%40wouter_decoster)](https://twitter.com/wouter_decoster)
+[![install with conda](https://anaconda.org/bioconda/nanoplotter/badges/installer/conda.svg)](https://anaconda.org/bioconda/nanoplotter)
+[![Build Status](https://travis-ci.org/wdecoster/nanoplotter.svg?branch=master)](https://travis-ci.org/wdecoster/nanoplotter)
+
+
+
+## FUNCTIONS
+* Check if a specified color is a valid matplotlib color `checkvalidColor(color)`
+* Check if a specified output format is valid `checkvalidFormat(format)`
+* Create a bivariate plot with dots, hexbins and/or kernel density estimates. Also arguments for specifying axis names, color and xlim/ylim. `scatter(x, y, names, path, color, format, plots, stat=None, log=False, minvalx=0, minvaly=0)`
+* Create cumulative yield plot and evaluate read length and quality over time `timePlots(df, path, color, format)`
+* Create length distribution histogram and density curve `lengthPlots(array, name, path, n50, color, format, log=False)`
+* Create flowcell physical layout in numpy array `makeLayout()`
+* Present the activity (number of reads) per channel on the flowcell as a heatmap `spatialHeatmap(array, title, path, color, format)`
+
+
+## INSTALLATION
+```bash
+pip install nanoplotter
+```
+or
+[![install with conda](https://anaconda.org/bioconda/nanoplotter/badges/installer/conda.svg)](https://anaconda.org/bioconda/nanoplotter)
+```
+conda install -c bioconda nanoplotter
+```
+
+## CITATION
+If you use this tool, please consider citing our [publication](https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939).
+
+%prep
+%autosetup -n nanoplotter-1.10.0
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-nanoplotter -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Wed May 31 2023 Python_Bot <Python_Bot@openeuler.org> - 1.10.0-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..55ae0c0
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+49110806b0114092a370a43d0f1866fb nanoplotter-1.10.0.tar.gz