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authorCoprDistGit <infra@openeuler.org>2023-06-20 04:45:49 +0000
committerCoprDistGit <infra@openeuler.org>2023-06-20 04:45:49 +0000
commit22fea72eeeab22c7f33ed1664a79dbaa348b5b4c (patch)
treeb6c744400037ead978f27d07381fd2a8efda63ee
parent7edc9cb237f420564d5a96edb82bac4f5de56ba4 (diff)
automatic import of python-patientMatcheropeneuler20.03
-rw-r--r--.gitignore1
-rw-r--r--python-patientmatcher.spec133
-rw-r--r--sources1
3 files changed, 135 insertions, 0 deletions
diff --git a/.gitignore b/.gitignore
index e69de29..23badbd 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/patientMatcher-4.3.tar.gz
diff --git a/python-patientmatcher.spec b/python-patientmatcher.spec
new file mode 100644
index 0000000..2ceb5b5
--- /dev/null
+++ b/python-patientmatcher.spec
@@ -0,0 +1,133 @@
+%global _empty_manifest_terminate_build 0
+Name: python-patientMatcher
+Version: 4.3
+Release: 1
+Summary: A python and MongoDB-based Matchmaker Exchange server
+License: MIT
+URL: https://github.com/Clinical-Genomics/patientMatcher
+Source0: https://mirrors.aliyun.com/pypi/web/packages/4e/e9/89066152d4e630d8489b7e7ffd4b26d0557723b48d1d9b1807562c327c0e/patientMatcher-4.3.tar.gz
+BuildArch: noarch
+
+Requires: python3-coloredlogs
+Requires: python3-Flask
+Requires: python3-Flask-Mail
+Requires: python3-flask-negotiate
+Requires: python3-requests
+Requires: python3-responses
+Requires: python3-jsonschema
+Requires: python3-pymongo
+Requires: python3-enlighten
+Requires: python3-clint
+
+%description
+
+# patientMatcher - a Python and MongoDB - based MatchMaker Exchange server
+[![Build Status](https://travis-ci.com/Clinical-Genomics/patientMatcher.svg?branch=master)](https://travis-ci.com/Clinical-Genomics/patientMatcher) [![codecov](https://codecov.io/gh/Clinical-Genomics/patientMatcher/branch/master/graph/badge.svg?token=WXHDu9U8qk)](https://codecov.io/gh/Clinical-Genomics/patientMatcher)
+[![DOI](https://zenodo.org/badge/DOI/10.1002/humu.24358.svg)](https://doi.org/10.1002/humu.24358)
+
+
+PatientMatcher is a **Python** (Flask) and **MongoDB** - based implementation of a [MatchMaker Exchange](https://www.matchmakerexchange.org/) (MME) server, developed and actively maintained by [Clinical Genomics, Science For Life Laboratory in Stockholm](https://www.scilifelab.se/units/clinical-genomics-stockholm/). PatientMatcher is designed as a standalone application, but can easily communicate with external applications via REST API. The MME Stockholm node is being implemented in clinical production in collaboration with the Genomic Medicine Center Karolinska at the Karolinska University Hospital.
+
+Info on how to test PatientMatcher or to set up a server containing an app frontend and backend is available on the [documentation pages](https://clinical-genomics.github.io/patientMatcher).
+
+
+
+
+[travis-url]: https://travis-ci.org/Clinical-Genomics/patientMatcher
+[travis-image]: https://img.shields.io/travis/Clinical-Genomics/patientMatcher.svg?style=flat-square
+
+
+
+
+%package -n python3-patientMatcher
+Summary: A python and MongoDB-based Matchmaker Exchange server
+Provides: python-patientMatcher
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+%description -n python3-patientMatcher
+
+# patientMatcher - a Python and MongoDB - based MatchMaker Exchange server
+[![Build Status](https://travis-ci.com/Clinical-Genomics/patientMatcher.svg?branch=master)](https://travis-ci.com/Clinical-Genomics/patientMatcher) [![codecov](https://codecov.io/gh/Clinical-Genomics/patientMatcher/branch/master/graph/badge.svg?token=WXHDu9U8qk)](https://codecov.io/gh/Clinical-Genomics/patientMatcher)
+[![DOI](https://zenodo.org/badge/DOI/10.1002/humu.24358.svg)](https://doi.org/10.1002/humu.24358)
+
+
+PatientMatcher is a **Python** (Flask) and **MongoDB** - based implementation of a [MatchMaker Exchange](https://www.matchmakerexchange.org/) (MME) server, developed and actively maintained by [Clinical Genomics, Science For Life Laboratory in Stockholm](https://www.scilifelab.se/units/clinical-genomics-stockholm/). PatientMatcher is designed as a standalone application, but can easily communicate with external applications via REST API. The MME Stockholm node is being implemented in clinical production in collaboration with the Genomic Medicine Center Karolinska at the Karolinska University Hospital.
+
+Info on how to test PatientMatcher or to set up a server containing an app frontend and backend is available on the [documentation pages](https://clinical-genomics.github.io/patientMatcher).
+
+
+
+
+[travis-url]: https://travis-ci.org/Clinical-Genomics/patientMatcher
+[travis-image]: https://img.shields.io/travis/Clinical-Genomics/patientMatcher.svg?style=flat-square
+
+
+
+
+%package help
+Summary: Development documents and examples for patientMatcher
+Provides: python3-patientMatcher-doc
+%description help
+
+# patientMatcher - a Python and MongoDB - based MatchMaker Exchange server
+[![Build Status](https://travis-ci.com/Clinical-Genomics/patientMatcher.svg?branch=master)](https://travis-ci.com/Clinical-Genomics/patientMatcher) [![codecov](https://codecov.io/gh/Clinical-Genomics/patientMatcher/branch/master/graph/badge.svg?token=WXHDu9U8qk)](https://codecov.io/gh/Clinical-Genomics/patientMatcher)
+[![DOI](https://zenodo.org/badge/DOI/10.1002/humu.24358.svg)](https://doi.org/10.1002/humu.24358)
+
+
+PatientMatcher is a **Python** (Flask) and **MongoDB** - based implementation of a [MatchMaker Exchange](https://www.matchmakerexchange.org/) (MME) server, developed and actively maintained by [Clinical Genomics, Science For Life Laboratory in Stockholm](https://www.scilifelab.se/units/clinical-genomics-stockholm/). PatientMatcher is designed as a standalone application, but can easily communicate with external applications via REST API. The MME Stockholm node is being implemented in clinical production in collaboration with the Genomic Medicine Center Karolinska at the Karolinska University Hospital.
+
+Info on how to test PatientMatcher or to set up a server containing an app frontend and backend is available on the [documentation pages](https://clinical-genomics.github.io/patientMatcher).
+
+
+
+
+[travis-url]: https://travis-ci.org/Clinical-Genomics/patientMatcher
+[travis-image]: https://img.shields.io/travis/Clinical-Genomics/patientMatcher.svg?style=flat-square
+
+
+
+
+%prep
+%autosetup -n patientMatcher-4.3
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-patientMatcher -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Tue Jun 20 2023 Python_Bot <Python_Bot@openeuler.org> - 4.3-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..2c864ed
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+9098632f6e39e739353a2741ddab8b7c patientMatcher-4.3.tar.gz