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%global _empty_manifest_terminate_build 0
Name: python-RUST
Version: 0.1.1
Release: 1
Summary: Ribo-Seq Unit Step Transformation
License: GPL
URL: http://ribogalaxy.ucc.ie
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/c3/ff/1ffe5c38505fd5226e344aaf91fd43dc38648ccf79ae7096ea0fa4f7f815/RUST-0.1.1.tar.gz
BuildArch: noarch
Requires: python3-biopython
Requires: python3-matplotlib
Requires: python3-mock
Requires: python3-pysam
%description
This tool is designed for ribo-seq data and produces a metafootprint profile
that reveals the influence of mRNA features such as codons/amino acids on
the relative read density in the sample across the entire ribosome and nascent
peptide region. The Kullback-Leibler divergence across these sites is also provided.
An online version is available on `RiboGalaxy <http://ribogalaxy.ucc.ie>`_.
Author: Patrick O'Connor
**Citation**
Surveying the relative impact of mRNA features on local ribosome profiling read density in 28 datasets.
Patrick O'Connor, Dmitry Andreev, Pavel Baranov
bioRxiv doi: http://dx.doi.org/10.1101/018762
%package -n python3-RUST
Summary: Ribo-Seq Unit Step Transformation
Provides: python-RUST
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-RUST
This tool is designed for ribo-seq data and produces a metafootprint profile
that reveals the influence of mRNA features such as codons/amino acids on
the relative read density in the sample across the entire ribosome and nascent
peptide region. The Kullback-Leibler divergence across these sites is also provided.
An online version is available on `RiboGalaxy <http://ribogalaxy.ucc.ie>`_.
Author: Patrick O'Connor
**Citation**
Surveying the relative impact of mRNA features on local ribosome profiling read density in 28 datasets.
Patrick O'Connor, Dmitry Andreev, Pavel Baranov
bioRxiv doi: http://dx.doi.org/10.1101/018762
%package help
Summary: Development documents and examples for RUST
Provides: python3-RUST-doc
%description help
This tool is designed for ribo-seq data and produces a metafootprint profile
that reveals the influence of mRNA features such as codons/amino acids on
the relative read density in the sample across the entire ribosome and nascent
peptide region. The Kullback-Leibler divergence across these sites is also provided.
An online version is available on `RiboGalaxy <http://ribogalaxy.ucc.ie>`_.
Author: Patrick O'Connor
**Citation**
Surveying the relative impact of mRNA features on local ribosome profiling read density in 28 datasets.
Patrick O'Connor, Dmitry Andreev, Pavel Baranov
bioRxiv doi: http://dx.doi.org/10.1101/018762
%prep
%autosetup -n RUST-0.1.1
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-RUST -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Tue Apr 11 2023 Python_Bot <Python_Bot@openeuler.org> - 0.1.1-1
- Package Spec generated
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